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Lj4g3v2951120.1

Overview

Field Value
Gene ID Lj4g3v2951120
Transcript ID Lj4g3v2951120.1
Lotus japonicus genome version MG20 v3.0
Description RNA-binding protein NOB1 [Medicago truncatula] gi|357520491|ref|XP_003630534.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR12814:SF2
1 188 188 1.20E-154 –
MobiDBLite
mobidb-lite
1 36 36 – –
PANTHER
PTHR12814
1 188 188 1.20E-154 –
PIRSF
PIRSF037125
39 607 569 5.10E-122
IPR017117
CDD
cd09876
57 162 106 8.46E-43 –
Pfam
PF17146
57 143 87 1.50E-24
IPR033411
MobiDBLite
mobidb-lite
220 249 30 – –
PANTHER
PTHR12814
263 607 345 1.20E-154 –
PANTHER
PTHR12814:SF2
263 607 345 1.20E-154 –
MobiDBLite
mobidb-lite
292 345 54 – –
Coils
Coil
299 319 21 – –
SUPERFAMILY
SSF144206
458 520 63 6.02E-17
IPR014881
Pfam
PF08772
458 528 71 7.70E-22
IPR014881

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000469
Biological process Cleavage involved in rRNA processing Any phosphodiester bond hydrolysis involved in the conversion of a primary ribosomal RNA (rRNA) transcript into a mature rRNA molecule.
Subterm of
Part of
GO:0004521
Molecular function Endoribonuclease activity Catalysis of the hydrolysis of ester linkages within ribonucleic acid by creating internal breaks.
Subterm of
GO:0042274
Biological process Ribosomal small subunit biogenesis A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a small ribosomal subunit; includes transport to the sites of protein synthesis.
Subterm of
Part of

Genome browser

LORE1 insertions 1

Expression data

Expression pattern

Expression pattern of Lj4g3v2951120.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v2951120.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.