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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0424700 |
| Transcript ID | LotjaGi4g1v0424700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-binding protein NOB1; TAIR: AT5G41190.1 RNA-binding NOB1-like protein; Swiss-Prot: sp|Q3T042|NOB1_BOVIN RNA-binding protein NOB1; TrEMBL-Plants: tr|G7LI13|G7LI13_MEDTR RNA-binding protein NOB1; Found in the gene: LotjaGi4g1v0424700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:79962866..79966401) extracted from Lotus japonicus Gifu genome v1.2.
GTAAAGGCCTTTGAGTCCCATGATAAAAATAAATGATTGACATCGCCCAGCTGATATAAAATACTAAGTTCCATTCGACC AAAAAAAAAAAAAGAATATCACTAAACCCTAAAAATTGTGTCATGATTCACCAGTAGCAACCAACAGAAACGATCTCTCT CCCCGCGCCAGTGAATCATGGAAGAAGCTCCACCACTTCCAGCTCCAGTTTCAGCACCACAATCGTGCTGGAGCAGCGTC GTGAAGAAGGAGCCACCGCAACCGCAACCGCAACAGCCCCTGCCGTTGCCGACCGAGCTAGTGTTGGAAGACACCACCCG CAGTAATGGCGGCATCTCGGTGGCCGTCATCGACGCCAACGCTATCATTGAAGCCGGCAAAAACCTCCATGGCTTCGCCG ACAAGTTTGTCTCCGTCTCGGAAGTCATGCAGGAAATCCGTGACCCCGTCTCTCGCCACAAGCTCGCTTTCCTCCCCTTC ACCATCCAAACCATGGAACCCTCCCCTGAATCCATCAGCAAAGGTATCTTCAATATCCAGTTCACCCCCAATCACCATTA TCATGCTCATTTTCTTTCTAGGTATTATTAGTTTCTATATTGCATTTGTAAGAAAATTATCTTCTATTTTGATTTAGGGT TAATGGTCAAATTAGTCCTGAATTTGTAAGCGAGTTTGATTTTAGTCCCGGAAAAATGATGTAATTGTAAAAATGATCGT CACGGCTAAAATCAAACTCAGCTTACAAATTCAGCGACTAATTTGACCATTAACCCTTTGATTTAAACTAGACAATTTTT TCTCTTACTATAACTGCTCTAATGAGGATGATTTTGTATGAGATTTGTATTCACTTTTGTTTTGTGATTTGAAAGAATCT ATTAGATTCTAACTTGTACTTTTTCTATCTGTGGGACATTGTAGTTGTGAAATTTGCTAGGGCTACTGGTGACCTACAGA CTCTTTCTGATGTTGATATCAAGCTCATAGCTCTAACTTATACTTTGGAGGCTCAGATTCATGGAACAAAGCATCTCAGG GACTGCCCTCCTCCTGTGCAAGTGGTAAATGTGAAGAGGTTACCCGAGAAGGACTTGCCCGGATGGGGTACCAACGTGCC TAATTTGAAGGAGTGGGAAGCGTTAGAACAGGAAGCGGAGGACAAGGCGAATTCTACTTCAAGAATCCTTCCTTTGCAGG ACTTGAACTTGAACATTGTTCCCCAGGATGACGAACGCTCTGCAGATGGTTTGGCGGAGCATGCAAGTGAAACTCATTCA GAAACTCAAGAGGGTGGTGAGGGTGGTTCAGTGAAGCCTAAGAAATATGTGTCTAAGAAAAAGGAGATAAACATTGAAGG GAAGGTTGTGGCTAATGGAGTTGACGCGTCCCAAGGACAATTTGATGATAATGCTGGTGATTGGTTGCCTGCGGTCAGTC GAAGTACTCATAGGAGGTTTCTTAGAAGGAAAGCAAGACGGGAGCAGTCTGAAGCATTATCCAGTAATCAAGATCACCAA GATTTGGAAGAAAACATTGATGGTAGTGTTGGTGAAGACGATAGAGCTTCAGATCAGCTTGTTCATCAAAGTGATGAAGA AAATCATATTGAAAATGTTGTATCCCAGGATGATCAGATAATAGCGGAGAACAAAGACAATGAAATTCTCTCTGCTACTC TGAAGCAAATGAGTCTGGATGGTGATGCAACTATGTGCACTAAATCATGTGAGACAGATACAGCAAATGACCAATCAAGT CACTTGGACATTGCAAGCCAGACTAGCGAAGCAGCTGATTTTTCATATGCAGATGATGATGGTAGTGAGCAAAGTTGGAT GCTTAGATCGTTGTCTGAGTCAAGTGTAGCCTGTATTACTGGTGACTTTGCTATGCAAAATGTTCTTCTCCAAATGGGTT TGCGCTTGCTGGCGCCTGGTGGAACACAGATACACCAGCTGCATAGGTTATTTTCGGAAGCTTCTTCAATATTCACTATG TTATCACAGATAACCTGTCTTTGCTATGTGAAGAAAATTGTGAACACAAAAGAATTAAAAGTTGGATGTTTTATATAGCA CCATATAATATTATAATAGTATAATGACTTCTGCCTATTGCGCCTAATCTCTATGATACCATCCTATGCATCATACTATG ACAATGGTATTATACATGCTTATCTTTTGATTATTTGCATTCCAGATGGGTACTGAAGTGTCATGCCTGCTTCACTGTTA CTGCTGAAATCGGGAGGATTTTCTGTCCAAAATGTGGAAATGGTGGCACCTTAAGGAAGGTAGCTGTCACTGTTAATGAA AATGGAATAATGTTAGGAGCCCGCCGACCTCGAGTTTCATTACGTGGCACAAAGGTAAGAATATATCATTATAGATCCTA GTATATATACCAATTACTTTTTCATATGCCTGTTAGAGTGCTAGTAATTTTTTAACAGAAAGCTTGTTGCAACAGTCACT GTCATTTTTTAAATTGTTAACTAATATAATAGATTTGAAATCAAAATATAATGTGTCTCGCACCCTTTCTGGAGATTTAT AAGACCTGATGACCATTTTTACCCAACAAATTCATGTTGACAGATGTTGATTTTCATTTGTATGAATGTATGAATAATAA TGTATCTCCAGAATCGATTTAGGAAGTATAAAGAATATTGCCATTCACAAGAGGGGGATATATCCCTGATATGAACATTT TTATATTCTTATTACTGCAGTTCTTACATTCTTACATGATGTTATTGTGCAGTTTTCGTTGCCTTTACCTCAAGGTGGAA GGGATGCAGTCACAAAGAACCTTGTTCTCCGTGAAGATCAACTTCCTCACAGGGTACTTTATCCTAAAACGAAGAAGAAA GCCACACAGGTTTGTGTCTTTAAATTAATATAGCTAATGATTCCTTCTATCCCTCAATCAATTGGCTAGCTTTACTCTAA ACTGGGCTACTTAACGCACTTTGTAGGACGATGACTTCTTTACACCGGACAGTGTTTTTGGCCACCACACAGATAAGAGA TCTCCTTTCCAGCCTCCCATAAGGAAAGCATTAGCAGTTTTCAGCGGCAGGAGAAACCCAAATGACAATCACTACTCACG CTCTAAGCGCAAGTAGTGGATGTCTAAACTCTAAAGTATTGATTGGTGTACTTCCCACCCCCAATTTTGTTTTTGTTGTT TCACTTTGAATGTTACCTTGAAGTTTGTTAAGTTATAGAAATGGATTGATGTACGGAACATGGTTAAAAGTATGATTCAG TTTGCACGTTGAGGCAGGAAAGCTACTGATGGCTTTCATTTGCCTGCTAGTAAAATGTGAAGACAGCATTTGTTTTGCAC TGTACTGATTTTATTTTGGTGTCAATGGCTAATGCATACCACATATTCATGCGAACAGTGGCTTCAATTAATGTTATTAC AAGCATTTTTATTTTATAGCTGTCTATTATTCTTGACGAGTGACGACTGCCTGGGGTTGTCTGTGGTAAGGTCAAATTAT TGACCAGATCAAAAAC
CDS sequence (LotjaGi4g1v0424700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGAAGCTCCACCACTTCCAGCTCCAGTTTCAGCACCACAATCGTGCTGGAGCAGCGTCGTGAAGAAGGAGCCACC GCAACCGCAACCGCAACAGCCCCTGCCGTTGCCGACCGAGCTAGTGTTGGAAGACACCACCCGCAGTAATGGCGGCATCT CGGTGGCCGTCATCGACGCCAACGCTATCATTGAAGCCGGCAAAAACCTCCATGGCTTCGCCGACAAGTTTGTCTCCGTC TCGGAAGTCATGCAGGAAATCCGTGACCCCGTCTCTCGCCACAAGCTCGCTTTCCTCCCCTTCACCATCCAAACCATGGA ACCCTCCCCTGAATCCATCAGCAAAGTTGTGAAATTTGCTAGGGCTACTGGTGACCTACAGACTCTTTCTGATGTTGATA TCAAGCTCATAGCTCTAACTTATACTTTGGAGGCTCAGATTCATGGAACAAAGCATCTCAGGGACTGCCCTCCTCCTGTG CAAGTGGTAAATGTGAAGAGGTTACCCGAGAAGGACTTGCCCGGATGGGGTACCAACGTGCCTAATTTGAAGGAGTGGGA AGCGTTAGAACAGGAAGCGGAGGACAAGGCGAATTCTACTTCAAGAATCCTTCCTTTGCAGGACTTGAACTTGAACATTG TTCCCCAGGATGACGAACGCTCTGCAGATGGTTTGGCGGAGCATGCAAGTGAAACTCATTCAGAAACTCAAGAGGGTGGT GAGGGTGGTTCAGTGAAGCCTAAGAAATATGTGTCTAAGAAAAAGGAGATAAACATTGAAGGGAAGGTTGTGGCTAATGG AGTTGACGCGTCCCAAGGACAATTTGATGATAATGCTGGTGATTGGTTGCCTGCGGTCAGTCGAAGTACTCATAGGAGGT TTCTTAGAAGGAAAGCAAGACGGGAGCAGTCTGAAGCATTATCCAGTAATCAAGATCACCAAGATTTGGAAGAAAACATT GATGGTAGTGTTGGTGAAGACGATAGAGCTTCAGATCAGCTTGTTCATCAAAGTGATGAAGAAAATCATATTGAAAATGT TGTATCCCAGGATGATCAGATAATAGCGGAGAACAAAGACAATGAAATTCTCTCTGCTACTCTGAAGCAAATGAGTCTGG ATGGTGATGCAACTATGTGCACTAAATCATGTGAGACAGATACAGCAAATGACCAATCAAGTCACTTGGACATTGCAAGC CAGACTAGCGAAGCAGCTGATTTTTCATATGCAGATGATGATGGTAGTGAGCAAAGTTGGATGCTTAGATCGTTGTCTGA GTCAAGTGTAGCCTGTATTACTGGTGACTTTGCTATGCAAAATGTTCTTCTCCAAATGGGTTTGCGCTTGCTGGCGCCTG GTGGAACACAGATACACCAGCTGCATAGATGGGTACTGAAGTGTCATGCCTGCTTCACTGTTACTGCTGAAATCGGGAGG ATTTTCTGTCCAAAATGTGGAAATGGTGGCACCTTAAGGAAGGTAGCTGTCACTGTTAATGAAAATGGAATAATGTTAGG AGCCCGCCGACCTCGAGTTTCATTACGTGGCACAAAGTTTTCGTTGCCTTTACCTCAAGGTGGAAGGGATGCAGTCACAA AGAACCTTGTTCTCCGTGAAGATCAACTTCCTCACAGGGTACTTTATCCTAAAACGAAGAAGAAAGCCACACAGGACGAT GACTTCTTTACACCGGACAGTGTTTTTGGCCACCACACAGATAAGAGATCTCCTTTCCAGCCTCCCATAAGGAAAGCATT AGCAGTTTTCAGCGGCAGGAGAAACCCAAATGACAATCACTACTCACGCTCTAAGCGCAAGTAG
Protein sequence (LotjaGi4g1v0424700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEEAPPLPAPVSAPQSCWSSVVKKEPPQPQPQQPLPLPTELVLEDTTRSNGGISVAVIDANAIIEAGKNLHGFADKFVSV SEVMQEIRDPVSRHKLAFLPFTIQTMEPSPESISKVVKFARATGDLQTLSDVDIKLIALTYTLEAQIHGTKHLRDCPPPV QVVNVKRLPEKDLPGWGTNVPNLKEWEALEQEAEDKANSTSRILPLQDLNLNIVPQDDERSADGLAEHASETHSETQEGG EGGSVKPKKYVSKKKEINIEGKVVANGVDASQGQFDDNAGDWLPAVSRSTHRRFLRRKARREQSEALSSNQDHQDLEENI DGSVGEDDRASDQLVHQSDEENHIENVVSQDDQIIAENKDNEILSATLKQMSLDGDATMCTKSCETDTANDQSSHLDIAS QTSEAADFSYADDDGSEQSWMLRSLSESSVACITGDFAMQNVLLQMGLRLLAPGGTQIHQLHRWVLKCHACFTVTAEIGR IFCPKCGNGGTLRKVAVTVNENGIMLGARRPRVSLRGTKFSLPLPQGGRDAVTKNLVLREDQLPHRVLYPKTKKKATQDD DFFTPDSVFGHHTDKRSPFQPPIRKALAVFSGRRNPNDNHYSRSKRK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 36 | 36 | - | – | |
| PIRSF | 39 | 607 | 569 | 4.0E-125 | ||
| PANTHER | 46 | 606 | 561 | 1.0E-139 | ||
| Gene3D | 49 | 156 | 108 | 3.8E-25 | – | |
| Pfam | 57 | 143 | 87 | 7.2E-26 | ||
| CDD | 57 | 168 | 112 | 1.0918E-41 | – | |
| MobiDBLite | 220 | 235 | 16 | - | – | |
| MobiDBLite | 220 | 249 | 30 | - | – | |
| MobiDBLite | 292 | 341 | 50 | - | – | |
| Coils | 299 | 319 | 21 | - | – | |
| MobiDBLite | 299 | 341 | 43 | - | – | |
| Gene3D | 452 | 527 | 76 | 5.1E-21 | ||
| SUPERFAMILY | 458 | 521 | 64 | 1.31E-17 | ||
| Pfam | 458 | 528 | 71 | 7.8E-23 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Cleavage involved in rRNA processing | Any phosphodiester bond hydrolysis involved in the conversion of a primary ribosomal RNA (rRNA) transcript into a mature rRNA molecule. | ||
| Molecular function | Endoribonuclease activity | Catalysis of the hydrolysis of ester linkages within ribonucleic acid by creating internal breaks. | ||
| Biological process | Ribosomal small subunit biogenesis | A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a small ribosomal subunit; includes transport to the sites of protein synthesis. |
Expression pattern of LotjaGi4g1v0424700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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