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IPR035623 is a SUA-like, OCRE domain.
<p>SUA is an RNA-binding protein located in the nucleus and expressed in all plant tissues. It functions as a splicing factor that influences seed maturation by controlling alternative splicing of ABI3. The suppression of the cryptic ABI3 intron indicates a role of SUA in mRNA processing. SUA also interacts with the prespliceosomal component U2AF65, the larger subunit of the conserved pre-mRNA splicing factor U2AF. SUA contains two RNA recognition motifs surrounding a zinc finger domain, an OCtamer REpeat (OCRE) domain, and a Gly-rich domain close to the C terminus [[cite:PUB00085724]].</p> <p>The OCRE (OCtamer REpeat) domain contains five repeats of an 8-residue motif, which were shown to form β-strands. Based on the architectures of proteins containing OCRE domains, a role in RNA metabolism and/or signalling has been proposed [[cite:PUB00085724]].</p>
This description is obtained from EB-eye REST.
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | RNA-binding protein, putative; TAIR: AT3G54230.2 suppressor of abi3-5; Swiss-Prot: sp|F4JCU0|SUA_ARATH SUPPRESSOR OF ABI3-5; TrEMBL-Plants: tr|A0A072U387|A0A072U387_MEDTR RNA-binding protein, putative; Found in the gene: LotjaGi4g1v0147400 | 27 | ||
| – | RNA-binding protein, putative; TAIR: AT3G54230.2 suppressor of abi3-5; Swiss-Prot: sp|F4JCU0|SUA_ARATH SUPPRESSOR OF ABI3-5; TrEMBL-Plants: tr|A0A072U3A2|A0A072U3A2_MEDTR RNA-binding protein, putative; Found in the gene: LotjaGi4g1v0147400 | 23 | ||
| – | RNA-binding protein, putative; TAIR: AT3G54230.2 suppressor of abi3-5; Swiss-Prot: sp|F4JCU0|SUA_ARATH SUPPRESSOR OF ABI3-5; TrEMBL-Plants: tr|A0A072U387|A0A072U387_MEDTR RNA-binding protein, putative; Found in the gene: LotjaGi4g1v0147400 | 27 | ||
| – | RNA-binding protein, putative; TAIR: AT3G54230.2 suppressor of abi3-5; Swiss-Prot: sp|F4JCU0|SUA_ARATH SUPPRESSOR OF ABI3-5; TrEMBL-Plants: tr|A0A072U387|A0A072U387_MEDTR RNA-binding protein, putative; Found in the gene: LotjaGi4g1v0147400 | 27 | ||
| – | RNA-binding protein, putative; TAIR: AT3G54230.2 suppressor of abi3-5; Swiss-Prot: sp|F4JCU0|SUA_ARATH SUPPRESSOR OF ABI3-5; TrEMBL-Plants: tr|A0A072TS81|A0A072TS81_MEDTR RNA-binding protein, putative; Found in the gene: LotjaGi4g1v0147400 | 27 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| mobidb-lite | MobiDBLite | 1 | 20.00 |