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IPR039727

Source: InterPro

Description

IPR039727 is a SERRATE/Ars2.

<p>This entry includes SERRATE (SE) from plants and its homologues, Ars2, from animals and Pir2 from Schizosaccharomyces pombe [[cite:PUB00094572]]. These proteins play a role in nuclear RNA metabolism. They interact with the nuclear cap-binding complex (CBC) and mediates interactions with diverse RNA processing and transport machineries in a transcript-dependent manner. Interestingly, the plant SERRATE does not have the RNA recognition motif (RRM) domain found in metazoans and S. pombe [[cite:PUB00090022]].</p> <p>In Arabidopsis, SE acts as a mediator between the cap-binding complex (CBC) and both the pre-mRNA splicing and primary microRNAs (miRNAs) processing machinery [[cite:PUB00090020], [cite:PUB00090021]]. Drosophila Ars2 has been shown to regulate both miRNA- and siRNA- dependent silencing and suppress RNA virus infection [[cite:PUB00063082]].</p>

This description is obtained from EB-eye REST.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0006397
Biological process MRNA processing Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.
Subterm of

Associated Lotus transcripts 7

Transcript Name Description Predicted domains Domain count
LotjaGi3g1v0101300.1
– Serrate RNA effector molecule-like protein; TAIR: AT2G27100.1 C2H2 zinc-finger protein SERRATE (SE); Swiss-Prot: sp|Q9ZVD0|SRRT_ARATH Serrate RNA effector molecule; TrEMBL-Plants: tr|K7KJV0|K7KJV0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0101300
Domains
11
LotjaGi3g1v0101300.2
– Serrate RNA effector molecule-like protein; TAIR: AT2G27100.1 C2H2 zinc-finger protein SERRATE (SE); Swiss-Prot: sp|Q9ZVD0|SRRT_ARATH Serrate RNA effector molecule; TrEMBL-Plants: tr|K7KJV0|K7KJV0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0101300
Domains
11
LotjaGi3g1v0307600.1
– Serrate RNA effector molecule-like protein; TAIR: AT2G27100.1 C2H2 zinc-finger protein SERRATE (SE); Swiss-Prot: sp|Q9ZVD0|SRRT_ARATH Serrate RNA effector molecule; TrEMBL-Plants: tr|A0A151R5X6|A0A151R5X6_CAJCA Serrate RNA effector molecule isogeny; Found in the gene: LotjaGi3g1v0307600
Domains
11
LotjaGi3g1v0313400_LC.1
– Serrate RNA effector molecule-like protein; TAIR: AT2G27100.1 C2H2 zinc-finger protein SERRATE (SE); Swiss-Prot: sp|Q9ZVD0|SRRT_ARATH Serrate RNA effector molecule; TrEMBL-Plants: tr|K7L882|K7L882_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0313400_LC
Domains
4
LotjaGi3g1v0313400_LC.2
– Serrate RNA effector molecule-like protein; TAIR: AT2G27100.1 C2H2 zinc-finger protein SERRATE (SE); Swiss-Prot: sp|Q9ZVD0|SRRT_ARATH Serrate RNA effector molecule; TrEMBL-Plants: tr|K7L882|K7L882_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0313400_LC
Domains
6
LotjaGi3g1v0313400_LC.3
– Serrate RNA effector molecule-like protein; TAIR: AT2G27100.1 C2H2 zinc-finger protein SERRATE (SE); Swiss-Prot: sp|Q9ZVD0|SRRT_ARATH Serrate RNA effector molecule; TrEMBL-Plants: tr|K7L882|K7L882_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0313400_LC
Domains
4
LotjaGi3g1v0313400_LC.4
– Serrate RNA effector molecule-like protein; TAIR: AT2G27100.1 C2H2 zinc-finger protein SERRATE (SE); Swiss-Prot: sp|Q9ZVD0|SRRT_ARATH Serrate RNA effector molecule; TrEMBL-Plants: tr|K7L882|K7L882_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0313400_LC
Domains
4

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
mobidb-lite MobiDBLite 1 14.29