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IPR042173

Source: InterPro

Description

IPR042173 is a Ribonuclease J, domain 2.

<p>This superfamily contains proteins of about 50 to 77kDa. The central region is well conserved and contains three conserved histidines. Most of these proteins are related at the N-terminal region to the beta-lactamase family. Ribonuclease J cleaves the 5'-leader sequence of certain mRNAs and may play a role in the maturation and stability of specific mRNAs [[cite:PUB00074172]]. It is also required for the maturation of the 16S rRNA acting preferentially on 16S rRNA precursors after association of the 30S and 50S ribosomal subunits [[cite:PUB00074173], [cite:PUB00074174]].</p> <p>This superfamily represents the domain 2 found in ribonuclease J.</p>

This description is obtained from EB-eye REST.

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 4

Transcript Name Description Predicted domains Domain count
LotjaGi1g1v0237600.1
– Ribonuclease J; TAIR: AT5G63420.1 RNA-metabolising metallo-beta-lactamase family protein; Swiss-Prot: sp|P54122|RNJ_CORGL Ribonuclease J; TrEMBL-Plants: tr|G7J5I7|G7J5I7_MEDTR RNA-metabolising metallo-beta-lactamase; Found in the gene: LotjaGi1g1v0237600
Domains
19
LotjaGi1g1v0237600.2
– Ribonuclease J; TAIR: AT5G63420.1 RNA-metabolising metallo-beta-lactamase family protein; Swiss-Prot: sp|P54122|RNJ_CORGL Ribonuclease J; TrEMBL-Plants: tr|K7KL53|K7KL53_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0237600
Domains
14
LotjaGi1g1v0237600.3
– Ribonuclease J; TAIR: AT5G63420.1 RNA-metabolising metallo-beta-lactamase family protein; Swiss-Prot: sp|P54122|RNJ_CORGL Ribonuclease J; TrEMBL-Plants: tr|K7KL53|K7KL53_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0237600
Domains
19
LotjaGi1g1v0237600.4
– Ribonuclease J; TAIR: AT5G63420.1 RNA-metabolising metallo-beta-lactamase family protein; Swiss-Prot: sp|P54122|RNJ_CORGL Ribonuclease J; TrEMBL-Plants: tr|I1JXI6|I1JXI6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0237600
Domains
15

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
mobidb-lite MobiDBLite 1 25.00