Domain Predictions — View

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PF07521

Source: Pfam

Description

Zn-dependent metallo-hydrolase RNA specificity domain

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 29

Transcript	Name	Description	Predicted domains	Domain count
Lj0g3v0106869.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: cleavage and polyadenylation specificity factor subunit 2-like isoform 2 [Glycine max] gi\|356530858\|ref\|XP_003533996.1\|	Domains Coil IPR001279 IPR011108 IPR025069 IPR027075 PF07521 PF13299 PTHR11203 PTHR11203:SF5 SSF56281	10
Lj0g3v0261399.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: ribonuclease J-like isoform X1 [Cicer arietinum] gi\|502130444\|ref\|XP_004500652.1\|	Domains G3DSA:1.10.10.60 G3DSA:3.60.15.10 IPR001279 IPR004613 IPR009057 IPR011108 IPR017877 PF07521 PF12706 PF13837 PS50090 PTHR11203 PTHR11203:SF22 SM00849 SSF56281 cd12203 mobidb-lite	17
Lj0g3v0261399.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: ribonuclease J-like isoform X2 [Cicer arietinum] gi\|502130447\|ref\|XP_004500653.1\|	Domains G3DSA:1.10.10.60 IPR001279 IPR004613 IPR009057 IPR011108 IPR017877 PF07521 PF13837 PS50090 PTHR11203 PTHR11203:SF22 SSF56281 cd12203 mobidb-lite	14
Lj2g3v0156860.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: LOW QUALITY PROTEIN: cleavage and polyadenylation specificity factor subunit 3-II-like [Cicer arietinum] gi\|502123758\|ref\|XP_004498247.1\|	Domains IPR001279 IPR011108 PF07521 SSF56281	4
Lj2g3v0156870.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: LOW QUALITY PROTEIN: cleavage and polyadenylation specificity factor subunit 3-II-like [Cicer arietinum] gi\|502123758\|ref\|XP_004498247.1\|	Domains G3DSA:3.60.15.10 IPR001279 IPR011108 IPR022712 PF07521 PF10996 PF16661 PTHR11203 PTHR11203:SF37 SM00849 SM01027 SSF56281	12
Lj2g3v0156870.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: LOW QUALITY PROTEIN: cleavage and polyadenylation specificity factor subunit 3-II-like [Cicer arietinum] gi\|502123758\|ref\|XP_004498247.1\|	Domains IPR001279 IPR011108 IPR022712 PF07521 PF10996 PTHR11203 PTHR11203:SF37 SM01027 SSF56281	9
Lj4g3v1958780.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: LOW QUALITY PROTEIN: cleavage and polyadenylation specificity factor subunit 3-II-like [Cicer arietinum] gi\|502123758\|ref\|XP_004498247.1\|	Domains IPR001279 IPR011108 IPR022712 PF07521 PF10996 PTHR11203 PTHR11203:SF37 SM01027 SSF56281	9
Lj4g3v1958790.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: LOW QUALITY PROTEIN: cleavage and polyadenylation specificity factor subunit 3-II-like [Cicer arietinum] gi\|502123758\|ref\|XP_004498247.1\|	Domains IPR001279 IPR011108 PF07521 PTHR11203 PTHR11203:SF37 SSF56281	6
Lj4g3v2691880.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: cleavage and polyadenylation specificity factor subunit 3-I-like [Cicer arietinum] gi\|502076824\|ref\|XP_004485469.1\|	Domains Coil G3DSA:3.60.15.10 IPR001279 IPR011108 IPR021718 PF07521 PF11718 PTHR11203 PTHR11203:SF11 SM01098 SSF56281	11
Lj5g3v0508220.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: LOW QUALITY PROTEIN: cleavage and polyadenylation specificity factor subunit 3-II-like [Cicer arietinum] gi\|502123758\|ref\|XP_004498247.1\|	Domains G3DSA:3.60.15.10 IPR001279 IPR011108 IPR022712 PF07521 PF10996 PF16661 PTHR11203 PTHR11203:SF37 SM00849 SM01027 SSF56281	12
LotjaGi1g1v0237600.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Ribonuclease J; TAIR: AT5G63420.1 RNA-metabolising metallo-beta-lactamase family protein; Swiss-Prot: sp\|P54122\|RNJ_CORGL Ribonuclease J; TrEMBL-Plants: tr\|G7J5I7\|G7J5I7_MEDTR RNA-metabolising metallo-beta-lactamase; Found in the gene: LotjaGi1g1v0237600	Domains G3DSA:1.10.10.60 G3DSA:3.40.50.10710 G3DSA:3.60.15.10 IPR001279 IPR011108 IPR017877 IPR036866 IPR042173 PF07521 PF12706 PF13837 PS50090 PTHR43694 PTHR43694:SF5 SM00849 SSF56281 cd07714 cd12203 mobidb-lite	19
LotjaGi1g1v0237600.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Ribonuclease J; TAIR: AT5G63420.1 RNA-metabolising metallo-beta-lactamase family protein; Swiss-Prot: sp\|P54122\|RNJ_CORGL Ribonuclease J; TrEMBL-Plants: tr\|K7KL53\|K7KL53_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0237600	Domains G3DSA:3.40.50.10710 G3DSA:3.60.15.10 IPR001279 IPR011108 IPR036866 IPR042173 PF07521 PF12706 PTHR43694 PTHR43694:SF5 SM00849 SSF56281 cd07714 mobidb-lite	14
LotjaGi1g1v0237600.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Ribonuclease J; TAIR: AT5G63420.1 RNA-metabolising metallo-beta-lactamase family protein; Swiss-Prot: sp\|P54122\|RNJ_CORGL Ribonuclease J; TrEMBL-Plants: tr\|K7KL53\|K7KL53_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0237600	Domains G3DSA:1.10.10.60 G3DSA:3.40.50.10710 G3DSA:3.60.15.10 IPR001279 IPR011108 IPR017877 IPR036866 IPR042173 PF07521 PF12706 PF13837 PS50090 PTHR43694 PTHR43694:SF5 SM00849 SSF56281 cd07714 cd12203 mobidb-lite	19
LotjaGi1g1v0237600.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Ribonuclease J; TAIR: AT5G63420.1 RNA-metabolising metallo-beta-lactamase family protein; Swiss-Prot: sp\|P54122\|RNJ_CORGL Ribonuclease J; TrEMBL-Plants: tr\|I1JXI6\|I1JXI6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0237600	Domains G3DSA:1.10.10.60 G3DSA:3.40.50.10710 G3DSA:3.60.15.10 IPR011108 IPR017877 IPR036866 IPR042173 PF07521 PF13837 PS50090 PTHR43694 PTHR43694:SF5 SSF56281 cd12203 mobidb-lite	15
LotjaGi1g1v0255900.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cleavage and polyadenylation specificity factor subunit 3; TAIR: AT2G01730.1 cleavage and polyadenylation specificity factor 73 kDa subunit-II; Swiss-Prot: sp\|Q8GUU3\|CPS3B_ARATH Cleavage and polyadenylation specificity factor subunit 3-II; TrEMBL-Plants: tr\|A0A072VR63\|A0A072VR63_MEDTR Cleavage and polyadenylation specificity factor, putative; Found in the gene: LotjaGi1g1v0255900	Domains G3DSA:3.40.50.10890 G3DSA:3.60.15.10 IPR001279 IPR011108 IPR022712 IPR036866 IPR041897 PF07521 PF10996 PF16661 PTHR11203 PTHR11203:SF37 SM00849 SM01027 SSF56281 cd16291	16
LotjaGi1g1v0255900.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cleavage and polyadenylation specificity factor subunit 3; TAIR: AT2G01730.1 cleavage and polyadenylation specificity factor 73 kDa subunit-II; Swiss-Prot: sp\|Q8GUU3\|CPS3B_ARATH Cleavage and polyadenylation specificity factor subunit 3-II; TrEMBL-Plants: tr\|A0A072VR63\|A0A072VR63_MEDTR Cleavage and polyadenylation specificity factor, putative; Found in the gene: LotjaGi1g1v0255900	Domains G3DSA:3.40.50.10890 G3DSA:3.60.15.10 IPR001279 IPR011108 IPR022712 IPR036866 IPR041897 PF07521 PF10996 PF16661 PTHR11203 PTHR11203:SF37 SM00849 SM01027 SSF56281 cd16291	16
LotjaGi1g1v0255900.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cleavage and polyadenylation specificity factor subunit 3; TAIR: AT2G01730.1 cleavage and polyadenylation specificity factor 73 kDa subunit-II; Swiss-Prot: sp\|Q8GUU3\|CPS3B_ARATH Cleavage and polyadenylation specificity factor subunit 3-II; TrEMBL-Plants: tr\|A0A072VR63\|A0A072VR63_MEDTR Cleavage and polyadenylation specificity factor, putative; Found in the gene: LotjaGi1g1v0255900	Domains G3DSA:3.40.50.10890 G3DSA:3.60.15.10 IPR001279 IPR011108 IPR022712 IPR036866 IPR041897 PF07521 PF10996 PF16661 PTHR11203 PTHR11203:SF37 SM00849 SM01027 SSF56281 cd16291	16
LotjaGi1g1v0255900.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cleavage and polyadenylation specificity factor subunit 3; TAIR: AT2G01730.1 cleavage and polyadenylation specificity factor 73 kDa subunit-II; Swiss-Prot: sp\|Q8GUU3\|CPS3B_ARATH Cleavage and polyadenylation specificity factor subunit 3-II; TrEMBL-Plants: tr\|A0A072VR63\|A0A072VR63_MEDTR Cleavage and polyadenylation specificity factor, putative; Found in the gene: LotjaGi1g1v0255900	Domains G3DSA:3.40.50.10890 G3DSA:3.60.15.10 IPR001279 IPR011108 IPR022712 IPR036866 IPR041897 PF07521 PF10996 PF16661 PTHR11203 PTHR11203:SF37 SM00849 SM01027 SSF56281 cd16291	16
LotjaGi2g1v0072300.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cleavage and polyadenylation specificity factor subunit 3; TAIR: AT2G01730.1 cleavage and polyadenylation specificity factor 73 kDa subunit-II; Swiss-Prot: sp\|Q8GUU3\|CPS3B_ARATH Cleavage and polyadenylation specificity factor subunit 3-II; TrEMBL-Plants: tr\|V7C7J5\|V7C7J5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0072300	Domains G3DSA:3.40.50.10890 G3DSA:3.60.15.10 IPR001279 IPR011108 IPR022712 IPR036866 IPR041897 PF07521 PF10996 PF16661 PTHR11203 PTHR11203:SF37 SM00849 SM01027 SSF56281 cd16291	16
LotjaGi2g1v0072300.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cleavage and polyadenylation specificity factor subunit 3; TAIR: AT2G01730.1 cleavage and polyadenylation specificity factor 73 kDa subunit-II; Swiss-Prot: sp\|Q8GUU3\|CPS3B_ARATH Cleavage and polyadenylation specificity factor subunit 3-II; TrEMBL-Plants: tr\|V7C7J5\|V7C7J5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0072300	Domains G3DSA:3.40.50.10890 G3DSA:3.60.15.10 IPR001279 IPR011108 IPR022712 IPR036866 IPR041897 PF07521 PF10996 PF16661 PTHR11203 PTHR11203:SF37 SM00849 SM01027 SSF56281 cd16291	16
LotjaGi2g1v0141300.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cleavage and polyadenylation specificity factor subunit 2; TAIR: AT5G23880.1 cleavage and polyadenylation specificity factor 100; Swiss-Prot: sp\|Q9LKF9\|CPSF2_ARATH Cleavage and polyadenylation specificity factor subunit 2; TrEMBL-Plants: tr\|A0A1J7HZX4\|A0A1J7HZX4_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0141300	Domains Coil G3DSA:3.60.15.10 IPR001279 IPR011108 IPR022712 IPR025069 IPR027075 IPR035639 IPR036866 PF07521 PF10996 PF13299 PF16661 PTHR45922 SM01027 SSF56281 cd16293	17
LotjaGi2g1v0141300.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cleavage and polyadenylation specificity factor subunit 2-like protein; TAIR: AT5G23880.1 cleavage and polyadenylation specificity factor 100; Swiss-Prot: sp\|Q9LKF9\|CPSF2_ARATH Cleavage and polyadenylation specificity factor subunit 2; TrEMBL-Plants: tr\|A0A0B0PTU3\|A0A0B0PTU3_GOSAR Cleavage and polyadenylation specificity factor subunit 2-like protein; Found in the gene: LotjaGi2g1v0141300	Domains Coil G3DSA:3.40.50.10890 G3DSA:3.60.15.10 IPR001279 IPR011108 IPR025069 IPR027075 IPR035639 IPR036866 PF07521 PF13299 PF16661 PTHR45922 SSF56281 cd16293	15
LotjaGi2g1v0141300.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cleavage and polyadenylation specificity factor subunit 2; TAIR: AT5G23880.1 cleavage and polyadenylation specificity factor 100; Swiss-Prot: sp\|Q9LKF9\|CPSF2_ARATH Cleavage and polyadenylation specificity factor subunit 2; TrEMBL-Plants: tr\|A0A1J7HZX4\|A0A1J7HZX4_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0141300	Domains Coil G3DSA:3.60.15.10 IPR001279 IPR011108 IPR022712 IPR025069 IPR027075 IPR035639 IPR036866 PF07521 PF10996 PF13299 PF16661 PTHR45922 SM01027 SSF56281 cd16293	17
LotjaGi2g1v0141300.5 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cleavage and polyadenylation specificity factor subunit 2; TAIR: AT5G23880.1 cleavage and polyadenylation specificity factor 100; Swiss-Prot: sp\|Q9LKF9\|CPSF2_ARATH Cleavage and polyadenylation specificity factor subunit 2; TrEMBL-Plants: tr\|A0A1J7HZX4\|A0A1J7HZX4_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0141300	Domains Coil G3DSA:3.40.50.10890 G3DSA:3.60.15.10 IPR001279 IPR011108 IPR022712 IPR025069 IPR027075 IPR036866 PF07521 PF10996 PF13299 PF16661 PTHR45922 SM01027 SSF56281	16
LotjaGi5g1v0053100.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cleavage and polyadenylation specificity factor subunit 3; TAIR: AT2G01730.1 cleavage and polyadenylation specificity factor 73 kDa subunit-II; Swiss-Prot: sp\|Q8GUU3\|CPS3B_ARATH Cleavage and polyadenylation specificity factor subunit 3-II; TrEMBL-Plants: tr\|V7C7J5\|V7C7J5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0053100	Domains G3DSA:3.40.50.10890 G3DSA:3.60.15.10 IPR001279 IPR011108 IPR022712 IPR036866 IPR041897 PF07521 PF10996 PF16661 PTHR11203 PTHR11203:SF37 SM00849 SM01027 SSF56281 cd16291	16
LotjaGi5g1v0053100.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cleavage and polyadenylation specificity factor subunit 3; TAIR: AT2G01730.1 cleavage and polyadenylation specificity factor 73 kDa subunit-II; Swiss-Prot: sp\|Q8GUU3\|CPS3B_ARATH Cleavage and polyadenylation specificity factor subunit 3-II; TrEMBL-Plants: tr\|V7C7J5\|V7C7J5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0053100	Domains G3DSA:3.40.50.10890 G3DSA:3.60.15.10 IPR001279 IPR011108 IPR022712 IPR036866 IPR041897 PF07521 PF10996 PF16661 PTHR11203 PTHR11203:SF37 SM00849 SM01027 SSF56281 cd16291	16
LotjaGi5g1v0053100.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cleavage and polyadenylation specificity factor subunit 3; TAIR: AT2G01730.1 cleavage and polyadenylation specificity factor 73 kDa subunit-II; Swiss-Prot: sp\|Q8GUU3\|CPS3B_ARATH Cleavage and polyadenylation specificity factor subunit 3-II; TrEMBL-Plants: tr\|V7C7J5\|V7C7J5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0053100	Domains G3DSA:3.40.50.10890 G3DSA:3.60.15.10 IPR001279 IPR011108 IPR022712 IPR036866 IPR041897 PF07521 PF10996 PF16661 PTHR11203 PTHR11203:SF37 SM00849 SM01027 SSF56281 cd16291	16
LotjaGi6g1v0362400.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cleavage and polyadenylation specificity factor subunit 3; TAIR: AT1G61010.1 cleavage and polyadenylation specificity factor 73-I; Swiss-Prot: sp\|Q9C952\|CPSF3_ARATH Cleavage and polyadenylation specificity factor subunit 3-I; TrEMBL-Plants: tr\|K7LVE4\|K7LVE4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0362400	Domains Coil G3DSA:3.40.50.10890 G3DSA:3.60.15.10 IPR001279 IPR011108 IPR021718 IPR022712 IPR036866 PF00753 PF07521 PF10996 PF11718 PTHR11203 PTHR11203:SF48 SM00849 SM01027 SM01098 SSF56281 cd16292	19
LotjaGi6g1v0362400.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cleavage and polyadenylation specificity factor subunit 3; TAIR: AT1G61010.1 cleavage and polyadenylation specificity factor 73-I; Swiss-Prot: sp\|Q9C952\|CPSF3_ARATH Cleavage and polyadenylation specificity factor subunit 3-I; TrEMBL-Plants: tr\|K7LVE4\|K7LVE4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0362400	Domains CYTOPLASMIC_DOMAIN Coil G3DSA:3.40.50.10890 G3DSA:3.60.15.10 IPR001279 IPR011108 IPR021718 IPR022712 IPR036866 NON_CYTOPLASMIC_DOMAIN PF00753 PF07521 PF10996 PF11718 PTHR11203 PTHR11203:SF48 SM00849 SM01027 SM01098 SSF56281 TRANSMEMBRANE cd16292	22

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
cd16292	CDD	1	3.45