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IPR011108 is a Zn-dependent metallo-hydrolase, RNA specificity domain.
<p>The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in [interpro:IPR001279] and are common to all metallo-beta-lactamases. This, the fifth motif [[cite:PUB00014290]], appears to be specific to Zn-dependent metallohydrolases such as ribonuclease J 2 [[cite:PUB00078730]] which are involved in the processing of mRNA [[cite:PUB00041631], [cite:PUB00054497]]. This domain adds essential structural elements to the CASP-domain and is unique to RNA/DNA-processing nucleases, showing that they are pre-mRNA 3'-end-processing endonucleases [[cite:PUB00041631], [cite:PUB00054497], [cite:PUB00078730]].</p>
This description is obtained from EB-eye REST.
Transcript | Name | Description | Predicted domains | Domain count |
---|---|---|---|---|
– | PREDICTED: cleavage and polyadenylation specificity factor subunit 2-like isoform 2 [Glycine max] gi|356530858|ref|XP_003533996.1| | 10 | ||
– | PREDICTED: ribonuclease J-like isoform X1 [Cicer arietinum] gi|502130444|ref|XP_004500652.1| | 17 | ||
– | PREDICTED: ribonuclease J-like isoform X2 [Cicer arietinum] gi|502130447|ref|XP_004500653.1| | 14 | ||
– | PREDICTED: LOW QUALITY PROTEIN: cleavage and polyadenylation specificity factor subunit 3-II-like [Cicer arietinum] gi|502123758|ref|XP_004498247.1| | 4 | ||
– | PREDICTED: LOW QUALITY PROTEIN: cleavage and polyadenylation specificity factor subunit 3-II-like [Cicer arietinum] gi|502123758|ref|XP_004498247.1| | 12 | ||
– | PREDICTED: LOW QUALITY PROTEIN: cleavage and polyadenylation specificity factor subunit 3-II-like [Cicer arietinum] gi|502123758|ref|XP_004498247.1| | 9 | ||
– | PREDICTED: LOW QUALITY PROTEIN: cleavage and polyadenylation specificity factor subunit 3-II-like [Cicer arietinum] gi|502123758|ref|XP_004498247.1| | 9 | ||
– | PREDICTED: LOW QUALITY PROTEIN: cleavage and polyadenylation specificity factor subunit 3-II-like [Cicer arietinum] gi|502123758|ref|XP_004498247.1| | 6 | ||
– | PREDICTED: cleavage and polyadenylation specificity factor subunit 3-I-like [Cicer arietinum] gi|502076824|ref|XP_004485469.1| | 11 | ||
– | PREDICTED: LOW QUALITY PROTEIN: cleavage and polyadenylation specificity factor subunit 3-II-like [Cicer arietinum] gi|502123758|ref|XP_004498247.1| | 12 | ||
– | Ribonuclease J; TAIR: AT5G63420.1 RNA-metabolising metallo-beta-lactamase family protein; Swiss-Prot: sp|P54122|RNJ_CORGL Ribonuclease J; TrEMBL-Plants: tr|G7J5I7|G7J5I7_MEDTR RNA-metabolising metallo-beta-lactamase; Found in the gene: LotjaGi1g1v0237600 | 19 | ||
– | Ribonuclease J; TAIR: AT5G63420.1 RNA-metabolising metallo-beta-lactamase family protein; Swiss-Prot: sp|P54122|RNJ_CORGL Ribonuclease J; TrEMBL-Plants: tr|K7KL53|K7KL53_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0237600 | 14 | ||
– | Ribonuclease J; TAIR: AT5G63420.1 RNA-metabolising metallo-beta-lactamase family protein; Swiss-Prot: sp|P54122|RNJ_CORGL Ribonuclease J; TrEMBL-Plants: tr|K7KL53|K7KL53_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0237600 | 19 | ||
– | Ribonuclease J; TAIR: AT5G63420.1 RNA-metabolising metallo-beta-lactamase family protein; Swiss-Prot: sp|P54122|RNJ_CORGL Ribonuclease J; TrEMBL-Plants: tr|I1JXI6|I1JXI6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0237600 | 15 | ||
– | Cleavage and polyadenylation specificity factor subunit 3; TAIR: AT2G01730.1 cleavage and polyadenylation specificity factor 73 kDa subunit-II; Swiss-Prot: sp|Q8GUU3|CPS3B_ARATH Cleavage and polyadenylation specificity factor subunit 3-II; TrEMBL-Plants: tr|A0A072VR63|A0A072VR63_MEDTR Cleavage and polyadenylation specificity factor, putative; Found in the gene: LotjaGi1g1v0255900 | 16 | ||
– | Cleavage and polyadenylation specificity factor subunit 3; TAIR: AT2G01730.1 cleavage and polyadenylation specificity factor 73 kDa subunit-II; Swiss-Prot: sp|Q8GUU3|CPS3B_ARATH Cleavage and polyadenylation specificity factor subunit 3-II; TrEMBL-Plants: tr|A0A072VR63|A0A072VR63_MEDTR Cleavage and polyadenylation specificity factor, putative; Found in the gene: LotjaGi1g1v0255900 | 16 | ||
– | Cleavage and polyadenylation specificity factor subunit 3; TAIR: AT2G01730.1 cleavage and polyadenylation specificity factor 73 kDa subunit-II; Swiss-Prot: sp|Q8GUU3|CPS3B_ARATH Cleavage and polyadenylation specificity factor subunit 3-II; TrEMBL-Plants: tr|A0A072VR63|A0A072VR63_MEDTR Cleavage and polyadenylation specificity factor, putative; Found in the gene: LotjaGi1g1v0255900 | 16 | ||
– | Cleavage and polyadenylation specificity factor subunit 3; TAIR: AT2G01730.1 cleavage and polyadenylation specificity factor 73 kDa subunit-II; Swiss-Prot: sp|Q8GUU3|CPS3B_ARATH Cleavage and polyadenylation specificity factor subunit 3-II; TrEMBL-Plants: tr|A0A072VR63|A0A072VR63_MEDTR Cleavage and polyadenylation specificity factor, putative; Found in the gene: LotjaGi1g1v0255900 | 16 | ||
– | Cleavage and polyadenylation specificity factor subunit 3; TAIR: AT2G01730.1 cleavage and polyadenylation specificity factor 73 kDa subunit-II; Swiss-Prot: sp|Q8GUU3|CPS3B_ARATH Cleavage and polyadenylation specificity factor subunit 3-II; TrEMBL-Plants: tr|V7C7J5|V7C7J5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0072300 | 16 | ||
– | Cleavage and polyadenylation specificity factor subunit 3; TAIR: AT2G01730.1 cleavage and polyadenylation specificity factor 73 kDa subunit-II; Swiss-Prot: sp|Q8GUU3|CPS3B_ARATH Cleavage and polyadenylation specificity factor subunit 3-II; TrEMBL-Plants: tr|V7C7J5|V7C7J5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0072300 | 16 | ||
– | Cleavage and polyadenylation specificity factor subunit 2; TAIR: AT5G23880.1 cleavage and polyadenylation specificity factor 100; Swiss-Prot: sp|Q9LKF9|CPSF2_ARATH Cleavage and polyadenylation specificity factor subunit 2; TrEMBL-Plants: tr|A0A1J7HZX4|A0A1J7HZX4_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0141300 | 17 | ||
– | Cleavage and polyadenylation specificity factor subunit 2-like protein; TAIR: AT5G23880.1 cleavage and polyadenylation specificity factor 100; Swiss-Prot: sp|Q9LKF9|CPSF2_ARATH Cleavage and polyadenylation specificity factor subunit 2; TrEMBL-Plants: tr|A0A0B0PTU3|A0A0B0PTU3_GOSAR Cleavage and polyadenylation specificity factor subunit 2-like protein; Found in the gene: LotjaGi2g1v0141300 | 15 | ||
– | Cleavage and polyadenylation specificity factor subunit 2; TAIR: AT5G23880.1 cleavage and polyadenylation specificity factor 100; Swiss-Prot: sp|Q9LKF9|CPSF2_ARATH Cleavage and polyadenylation specificity factor subunit 2; TrEMBL-Plants: tr|A0A1J7HZX4|A0A1J7HZX4_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0141300 | 17 | ||
– | Cleavage and polyadenylation specificity factor subunit 2; TAIR: AT5G23880.1 cleavage and polyadenylation specificity factor 100; Swiss-Prot: sp|Q9LKF9|CPSF2_ARATH Cleavage and polyadenylation specificity factor subunit 2; TrEMBL-Plants: tr|A0A1J7HZX4|A0A1J7HZX4_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0141300 | 16 | ||
– | Cleavage and polyadenylation specificity factor subunit 3; TAIR: AT2G01730.1 cleavage and polyadenylation specificity factor 73 kDa subunit-II; Swiss-Prot: sp|Q8GUU3|CPS3B_ARATH Cleavage and polyadenylation specificity factor subunit 3-II; TrEMBL-Plants: tr|V7C7J5|V7C7J5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0053100 | 16 | ||
– | Cleavage and polyadenylation specificity factor subunit 3; TAIR: AT2G01730.1 cleavage and polyadenylation specificity factor 73 kDa subunit-II; Swiss-Prot: sp|Q8GUU3|CPS3B_ARATH Cleavage and polyadenylation specificity factor subunit 3-II; TrEMBL-Plants: tr|V7C7J5|V7C7J5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0053100 | 16 | ||
– | Cleavage and polyadenylation specificity factor subunit 3; TAIR: AT2G01730.1 cleavage and polyadenylation specificity factor 73 kDa subunit-II; Swiss-Prot: sp|Q8GUU3|CPS3B_ARATH Cleavage and polyadenylation specificity factor subunit 3-II; TrEMBL-Plants: tr|V7C7J5|V7C7J5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0053100 | 16 | ||
– | Cleavage and polyadenylation specificity factor subunit 3; TAIR: AT1G61010.1 cleavage and polyadenylation specificity factor 73-I; Swiss-Prot: sp|Q9C952|CPSF3_ARATH Cleavage and polyadenylation specificity factor subunit 3-I; TrEMBL-Plants: tr|K7LVE4|K7LVE4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0362400 | 19 | ||
– | Cleavage and polyadenylation specificity factor subunit 3; TAIR: AT1G61010.1 cleavage and polyadenylation specificity factor 73-I; Swiss-Prot: sp|Q9C952|CPSF3_ARATH Cleavage and polyadenylation specificity factor subunit 3-I; TrEMBL-Plants: tr|K7LVE4|K7LVE4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0362400 | 22 |
A list of co-occurring predicted domains within the L. japonicus gene space:
Predicted domain | Source | Observations | Saturation (%) |
---|---|---|---|
cd16292 | CDD | 1 | 3.45 |