Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

MF_01824

Source: Hamap

Description

Pyridoxal 5'-phosphate synthase subunit PdxS [pdxS].

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0042819
Biological process Vitamin B6 biosynthetic process The chemical reactions and pathways resulting in the formation of any of the vitamin B6 compounds; pyridoxal, pyridoxamine and pyridoxine and the active form, pyridoxal phosphate.
Subterm of
GO:0042823
Biological process Pyridoxal phosphate biosynthetic process The chemical reactions and pathways resulting in the formation of pyridoxal phosphate, pyridoxal phosphorylated at the hydroxymethyl group of C-5, the active form of vitamin B6.
Subterm of

Associated Lotus transcripts 4

Transcript Name Description Predicted domains Domain count
Lj6g3v1967070.1
– Pyridoxine biosynthesis protein [Lotus japonicus] gi|72256517|gb|AAZ67141.1|
Domains
14
LotjaGi6g1v0317700.1
– Pyridoxal 5'-phosphate synthase subunit PdxS; TAIR: AT5G01410.1 Aldolase-type TIM barrel family protein; Swiss-Prot: sp|Q39963|PDX1_HEVBR Probable pyridoxal 5'-phosphate synthase subunit PDX1; TrEMBL-Plants: tr|Q45FF1|Q45FF1_LOTJA Pyridoxine biosynthesis protein; Found in the gene: LotjaGi6g1v0317700
Domains
15
LotjaGi6g1v0317700.2
– Pyridoxal 5'-phosphate synthase subunit PdxS; TAIR: AT5G01410.1 Aldolase-type TIM barrel family protein; Swiss-Prot: sp|Q8L940|PDX13_ARATH Pyridoxal 5'-phosphate synthase subunit PDX1.3; TrEMBL-Plants: tr|Q45FF1|Q45FF1_LOTJA Pyridoxine biosynthesis protein; Found in the gene: LotjaGi6g1v0317700
Domains
15
LotjaGi6g1v0317700.3
– Pyridoxal 5'-phosphate synthase subunit PdxS; TAIR: AT5G01410.1 Aldolase-type TIM barrel family protein; Swiss-Prot: sp|Q8L940|PDX13_ARATH Pyridoxal 5'-phosphate synthase subunit PDX1.3; TrEMBL-Plants: tr|Q45FF1|Q45FF1_LOTJA Pyridoxine biosynthesis protein; Found in the gene: LotjaGi6g1v0317700
Domains
15

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
cd04727 CDD 1 25.00