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GO:0042819

View this GO term in other databases

Overview

Field Value
Namespace Biological process
Short description Vitamin B6 biosynthetic process
Full defintion The chemical reactions and pathways resulting in the formation of any of the vitamin B6 compounds; pyridoxal, pyridoxamine and pyridoxine and the active form, pyridoxal phosphate.
Subterm of

Relationships

The relationship of GO:0042819 with other GO terms.

Relationship type GO terms
Is a
Regulates n.a.
Part of n.a.
Positively regulates n.a.
Negatively regulates n.a.

Ancestor tree

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Additional data

This table contains additional metadata associated with the GO entry's definition field.

Field Value
GOCjl
URLhttp://www.indstate.edu/thcme/mwking/vitamins.html

Associated Lotus transcripts 13

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Transcript Name Description GO terms GO count
Lj0g3v0021599.1
– PREDICTED: pyridoxal biosynthesis protein PDX2-like [Cicer arietinum] gi|502147413|ref|XP_004506773.1|
GO terms
3
Lj0g3v0021599.2
– PREDICTED: pyridoxal biosynthesis protein PDX2-like [Cicer arietinum] gi|502147413|ref|XP_004506773.1|
GO terms
3
Lj3g3v2284470.1
– PREDICTED: probable pyridoxal biosynthesis protein PDX1.2-like [Cicer arietinum] gi|502147610|ref|XP_004506848.1|
GO terms
2
Lj3g3v2286550.1
– PREDICTED: probable pyridoxal biosynthesis protein PDX1.2-like [Cicer arietinum] gi|502147610|ref|XP_004506848.1|
GO terms
2
Lj6g3v1967070.1
– Pyridoxine biosynthesis protein [Lotus japonicus] gi|72256517|gb|AAZ67141.1|
GO terms
2
LotjaGi3g1v0210000.1
– Pyridoxal 5'-phosphate synthase subunit PdxT; TAIR: AT5G60540.1 pyridoxine biosynthesis 2; Swiss-Prot: sp|Q8LAD0|PDX2_ARATH Probable pyridoxal 5'-phosphate synthase subunit PDX2; TrEMBL-Plants: tr|I3SUR2|I3SUR2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0210000
GO terms
3
LotjaGi3g1v0210000.2
– Pyridoxal 5'-phosphate synthase subunit PdxT; TAIR: AT5G60540.1 pyridoxine biosynthesis 2; Swiss-Prot: sp|Q8LAD0|PDX2_ARATH Probable pyridoxal 5'-phosphate synthase subunit PDX2; TrEMBL-Plants: tr|I3SUR2|I3SUR2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0210000
GO terms
3
LotjaGi3g1v0210000.3
– Pyridoxal 5'-phosphate synthase subunit PdxT; TAIR: AT5G60540.1 pyridoxine biosynthesis 2; Swiss-Prot: sp|Q8LAD0|PDX2_ARATH Probable pyridoxal 5'-phosphate synthase subunit PDX2; TrEMBL-Plants: tr|I3SUR2|I3SUR2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0210000
GO terms
3
LotjaGi3g1v0210000.4
– Pyridoxal 5'-phosphate synthase subunit PdxT; TAIR: AT5G60540.1 pyridoxine biosynthesis 2; Swiss-Prot: sp|Q8LAD0|PDX2_ARATH Probable pyridoxal 5'-phosphate synthase subunit PDX2; TrEMBL-Plants: tr|I3SUR2|I3SUR2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0210000
GO terms
3
LotjaGi3g1v0364100.1
– Pyridoxal 5'-phosphate synthase subunit PdxS; TAIR: AT3G16050.1 pyridoxine biosynthesis 1.2; Swiss-Prot: sp|Q9ZNR6|PDX12_ARATH Pyridoxal 5'-phosphate synthase-like subunit PDX1.2; TrEMBL-Plants: tr|V4SSW9|V4SSW9_9ROSI Uncharacterized protein; Found in the gene: LotjaGi3g1v0364100
GO terms
2
LotjaGi6g1v0317700.1
– Pyridoxal 5'-phosphate synthase subunit PdxS; TAIR: AT5G01410.1 Aldolase-type TIM barrel family protein; Swiss-Prot: sp|Q39963|PDX1_HEVBR Probable pyridoxal 5'-phosphate synthase subunit PDX1; TrEMBL-Plants: tr|Q45FF1|Q45FF1_LOTJA Pyridoxine biosynthesis protein; Found in the gene: LotjaGi6g1v0317700
GO terms
2
LotjaGi6g1v0317700.2
– Pyridoxal 5'-phosphate synthase subunit PdxS; TAIR: AT5G01410.1 Aldolase-type TIM barrel family protein; Swiss-Prot: sp|Q8L940|PDX13_ARATH Pyridoxal 5'-phosphate synthase subunit PDX1.3; TrEMBL-Plants: tr|Q45FF1|Q45FF1_LOTJA Pyridoxine biosynthesis protein; Found in the gene: LotjaGi6g1v0317700
GO terms
2
LotjaGi6g1v0317700.3
– Pyridoxal 5'-phosphate synthase subunit PdxS; TAIR: AT5G01410.1 Aldolase-type TIM barrel family protein; Swiss-Prot: sp|Q8L940|PDX13_ARATH Pyridoxal 5'-phosphate synthase subunit PDX1.3; TrEMBL-Plants: tr|Q45FF1|Q45FF1_LOTJA Pyridoxine biosynthesis protein; Found in the gene: LotjaGi6g1v0317700
GO terms
2

Co-occuring GO terms 1

A list of co-occurring GO terms within the L. japonicus gene space:

GO term Namespace Name Observations Saturation (%)
GO:0042823
Biological process Pyridoxal phosphate biosynthetic process 1 7.69