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LotjaGi6g1v0317700.3

Overview

Field Value
Gene ID LotjaGi6g1v0317700
Transcript ID LotjaGi6g1v0317700.3
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Pyridoxal 5'-phosphate synthase subunit PdxS; TAIR: AT5G01410.1 Aldolase-type TIM barrel family protein; Swiss-Prot: sp|Q8L940|PDX13_ARATH Pyridoxal 5'-phosphate synthase subunit PDX1.3; TrEMBL-Plants: tr|Q45FF1|Q45FF1_LOTJA Pyridoxine biosynthesis protein; Found in the gene: LotjaGi6g1v0317700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:63514422..63515360) extracted from Lotus japonicus Gifu genome v1.2.

ACAACAATGGAAGGATCTGGAGTCGTCACTGTCTACGGCAACGGCGCCGCAATCACCGAGACCAAGAAATCCCCCTTCTC CGTCAAAGTCGGCCTCGCTCAGATGCTCCGCGGCGGCGTCATCATGGACGTCGTCAACGCCCAACAAGCCCGCATCGCCG AAGAAGCCGGCGCCTGCGCCGTCATGGCCCTCGAGCGTGTCCCCGCCGACATCCGCGCCCAAGGCGGCGTCGCTCGCATG AGCGACCCTCAGCTCATCAAGGAAATCAAACAAGCCGTCACCATCCCCGTCATGGCCAAAGCCCGCATCGGCCATTTCGT CGAAGCCCAGATCCTCGAAGCCATCGGCGTCGATTACGTCGACGAGAGCGAGGTCCTCACTCTCGCCGACGAGGATAACC ACATCAACAAGCACAATTTCCGCATCCCCTTCGTCTGCGGCTGCCGCAACCTTGGTGAAGCCCTCCGCCGTGTTCGTGAA GGCGCCGCCATGATTCGCACCAAGGGTGAGGCGGGGACTGGGAACATCGTTGAGGCGGTGAGGCATGTGAGGTCTGTGAT GGGTGACATTAGGGTTCTCAGGAACATGGATGATGATGAGGTCTTCACGTTTGCCAAGAAAATCGCTGCTCCTTATGATC TCGTCATGCAGACCAAGCAGCTTGGGAGGCTTCCGGTGGTTCATTTTGCTGCTGGTGGTGTTGCTACCCCTGCTGATGCG GCTTTGATGATGCAGCTTGGTTGTGACGGTGTGTTTGTTGGCTCTGGTGTTTTCAAGAGTGGTGATCCTGCGAAGCGTGC CAGGGCGATTGTGCAGGCTGTGACGCACTACAGTGACCCGGGGCTGCTGGCGGAGATTAGCTGCGGATTGGGGGAGGCTA TGGTTGGGCTCAATTTGAATGACAGCAATGTTGAGAGGTTTGCTAATCGGTCTGAATGA
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0317700.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAAGGATCTGGAGTCGTCACTGTCTACGGCAACGGCGCCGCAATCACCGAGACCAAGAAATCCCCCTTCTCCGTCAA AGTCGGCCTCGCTCAGATGCTCCGCGGCGGCGTCATCATGGACGTCGTCAACGCCCAACAAGCCCGCATCGCCGAAGAAG CCGGCGCCTGCGCCGTCATGGCCCTCGAGCGTGTCCCCGCCGACATCCGCGCCCAAGGCGGCGTCGCTCGCATGAGCGAC CCTCAGCTCATCAAGGAAATCAAACAAGCCGTCACCATCCCCGTCATGGCCAAAGCCCGCATCGGCCATTTCGTCGAAGC CCAGATCCTCGAAGCCATCGGCGTCGATTACGTCGACGAGAGCGAGGTCCTCACTCTCGCCGACGAGGATAACCACATCA ACAAGCACAATTTCCGCATCCCCTTCGTCTGCGGCTGCCGCAACCTTGGTGAAGCCCTCCGCCGTGTTCGTGAAGGCGCC GCCATGATTCGCACCAAGGGTGAGGCGGGGACTGGGAACATCGTTGAGGCGGTGAGGCATGTGAGGTCTGTGATGGGTGA CATTAGGGTTCTCAGGAACATGGATGATGATGAGGTCTTCACGTTTGCCAAGAAAATCGCTGCTCCTTATGATCTCGTCA TGCAGACCAAGCAGCTTGGGAGGCTTCCGGTGGTTCATTTTGCTGCTGGTGGTGTTGCTACCCCTGCTGATGCGGCTTTG ATGATGCAGCTTGGTTGTGACGGTGTGTTTGTTGGCTCTGGTGTTTTCAAGAGTGGTGATCCTGCGAAGCGTGCCAGGGC GATTGTGCAGGCTGTGACGCACTACAGTGACCCGGGGCTGCTGGCGGAGATTAGCTGCGGATTGGGGGAGGCTATGGTTG GGCTCAATTTGAATGACAGCAATGTTGAGAGGTTTGCTAATCGGTCTGAATGA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0317700.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEGSGVVTVYGNGAAITETKKSPFSVKVGLAQMLRGGVIMDVVNAQQARIAEEAGACAVMALERVPADIRAQGGVARMSD PQLIKEIKQAVTIPVMAKARIGHFVEAQILEAIGVDYVDESEVLTLADEDNHINKHNFRIPFVCGCRNLGEALRRVREGA AMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAL MMQLGCDGVFVGSGVFKSGDPAKRARAIVQAVTHYSDPGLLAEISCGLGEAMVGLNLNDSNVERFANRSE
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31829:SF4
1 310 310 1.0E-201 –
PANTHER
PTHR31829
1 310 310 1.0E-201
IPR001852
PIRSF
PIRSF029271
13 310 298 2.8E-154
IPR001852
Gene3D
G3DSA:3.20.20.70
16 310 295 7.6E-164
IPR013785
Hamap
MF_01824
21 310 290 49.846
IPR001852
Pfam
PF01680
24 229 206 6.6E-112
IPR033755
ProSiteProfiles
PS51129
26 310 285 168.43
IPR001852
TIGRFAM
TIGR00343
26 301 276 3.1E-143
IPR001852
CDD
cd04727
28 309 282 0.0
IPR001852
SUPERFAMILY
SSF51366
35 284 250 1.32E-67
IPR011060
ProSitePatterns
PS01235
222 240 19 -
IPR001852

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0042819
Biological process Vitamin B6 biosynthetic process The chemical reactions and pathways resulting in the formation of any of the vitamin B6 compounds; pyridoxal, pyridoxamine and pyridoxine and the active form, pyridoxal phosphate.
Subterm of
GO:0042823
Biological process Pyridoxal phosphate biosynthetic process The chemical reactions and pathways resulting in the formation of pyridoxal phosphate, pyridoxal phosphorylated at the hydroxymethyl group of C-5, the active form of vitamin B6.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0317700.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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