Domain Predictions — View

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PF00116

Source: Pfam

Description

Cytochrome C oxidase subunit II, periplasmic domain

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0004129 View details of GO:0004129 AmiGO InterPro QuickGO	Molecular function	Cytochrome-c oxidase activity	Catalysis of the reaction: 4 ferrocytochrome c + O2 + 4 H+ = 4 ferricytochrome c + 2 H2O.	Subterm of GO:0009055 GO:0015002 GO:0015078 GO:0016676
GO:0005507 View details of GO:0005507 AmiGO InterPro QuickGO	Molecular function	Copper ion binding	Interacting selectively and non-covalently with copper (Cu) ions.	Subterm of GO:0046914
GO:0016020 View details of GO:0016020 AmiGO InterPro QuickGO	Cellular component	Membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.	Subterm of GO:0005575

Associated Lotus transcripts 4

Transcript	Name	Description	Predicted domains	Domain count
Lj0g3v0062549.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Mitochondrial cytochrome c oxidase subunit II (mitochondrion) [Vicia faba] gi\|442803102\|gb\|AGC78837.1\|	Domains CYTOPLASMIC_DOMAIN G3DSA:1.10.287.90 G3DSA:2.60.40.420 IPR002429 IPR008972 IPR011759 IPR014222 NON_CYTOPLASMIC_DOMAIN PF00116 PF02790 PR01166 PS50857 PS50999 PTHR22888 PTHR22888:SF9 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF49503 SSF81464 TIGR02866 TMhelix TRANSMEMBRANE cd13912	25
Lj0g3v0175899.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Mitochondrial cytochrome c oxidase subunit II (mitochondrion) [Vicia faba] gi\|442803102\|gb\|AGC78837.1\|	Domains CYTOPLASMIC_DOMAIN G3DSA:1.10.287.90 G3DSA:2.60.40.420 IPR002429 IPR008972 IPR011759 IPR014222 NON_CYTOPLASMIC_DOMAIN PF00116 PF02790 PR01166 PS50857 PS50999 PTHR22888 PTHR22888:SF9 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF49503 SSF81464 TIGR02866 TMhelix TRANSMEMBRANE cd13912	25
Ljmitog3v0000870.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Mitochondrial cytochrome c oxidase subunit II (mitochondrion) [Vicia faba] gi\|442803102\|gb\|AGC78837.1\|	Domains CYTOPLASMIC_DOMAIN G3DSA:1.10.287.90 G3DSA:2.60.40.420 IPR002429 IPR008972 IPR011759 IPR014222 NON_CYTOPLASMIC_DOMAIN PF00116 PF02790 PR01166 PS50857 PS50999 PTHR22888 PTHR22888:SF9 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF49503 SSF81464 TIGR02866 TMhelix TRANSMEMBRANE cd13912	25
LotjaGi5g1v0122800.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cytochrome c oxidase subunit 2; TAIR: ATMG00160.1 cytochrome oxidase 2 (ChrM); Swiss-Prot: sp\|P05491\|COX2_SOYBN Cytochrome c oxidase subunit 2; TrEMBL-Plants: tr\|R4IUC9\|R4IUC9_VICFA Cytochrome c oxidase subunit 2; Found in the gene: LotjaGi5g1v0122800	Domains CYTOPLASMIC_DOMAIN G3DSA:1.10.287.90 G3DSA:2.60.40.420 IPR002429 IPR008972 IPR011759 IPR014222 IPR034210 IPR036257 NON_CYTOPLASMIC_DOMAIN PF00116 PF02790 PR01166 PS50857 PS50999 PTHR22888 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF49503 SSF81464 TIGR02866 TMhelix TRANSMEMBRANE cd13912	26

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
cd13912	CDD	1	25.00