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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0175899 |
| Transcript ID | Lj0g3v0175899.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | mitochondrial cytochrome c oxidase subunit II (mitochondrion) [Vicia faba] gi|442803102|gb|AGC78837.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 13 | 13 | – | – | |
| PANTHER | 1 | 250 | 250 | 1.50E-161 | – | |
| PANTHER | 1 | 250 | 250 | 1.50E-161 | – | |
| Phobius | 1 | 2 | 2 | – | – | |
| Phobius | 3 | 8 | 6 | – | – | |
| SUPERFAMILY | 4 | 107 | 104 | 5.56E-32 | ||
| Phobius | 9 | 13 | 5 | – | – | |
| ProSiteProfiles | 13 | 108 | 96 | 24.037 | ||
| Phobius | 14 | 38 | 25 | – | – | |
| Gene3D | 14 | 102 | 89 | 4.00E-36 | ||
| Pfam | 14 | 100 | 87 | 1.40E-29 | ||
| TIGRFAM | 25 | 243 | 219 | 6.60E-46 | ||
| TMHMM | 37 | 59 | 23 | – | – | |
| Phobius | 39 | 59 | 21 | – | – | |
| Phobius | 60 | 79 | 20 | – | – | |
| PRINTS | 74 | 86 | 13 | 1.80E-61 | – | |
| Phobius | 80 | 102 | 23 | – | – | |
| TMHMM | 80 | 102 | 23 | – | – | |
| PRINTS | 86 | 106 | 21 | 1.80E-61 | – | |
| Phobius | 103 | 255 | 153 | – | – | |
| Gene3D | 103 | 249 | 147 | 6.80E-54 | ||
| PRINTS | 109 | 128 | 20 | 1.80E-61 | – | |
| SUPERFAMILY | 110 | 248 | 139 | 8.12E-50 | ||
| ProSiteProfiles | 110 | 248 | 139 | 45.153 | ||
| CDD | 111 | 242 | 132 | 1.68E-84 | – | |
| Pfam | 113 | 237 | 125 | 7.40E-60 | ||
| PRINTS | 157 | 178 | 22 | 1.80E-61 | – | |
| PRINTS | 181 | 201 | 21 | 1.80E-61 | – | |
| PRINTS | 201 | 218 | 18 | 1.80E-61 | – | |
| PRINTS | 219 | 236 | 18 | 1.80E-61 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Cytochrome-c oxidase activity | Catalysis of the reaction: 4 ferrocytochrome c + O2 + 4 H+ = 4 ferricytochrome c + 2 H2O. | ||
| Molecular function | Copper ion binding | Interacting selectively and non-covalently with copper (Cu) ions. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Oxidoreductase activity | Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. | ||
| Biological process | Electron transport chain | A process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient. |
Expression pattern of Lj0g3v0175899.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0175899.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.