Domain Predictions — View

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TIGR02866

Source: TIGRFAM

Description

CoxB: cytochrome c oxidase, subunit II

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0016021 View details of GO:0016021 AmiGO InterPro QuickGO	Cellular component	Integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.	Subterm of GO:0031224
GO:0016491 View details of GO:0016491 AmiGO InterPro QuickGO	Molecular function	Oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.	Subterm of GO:0003824

Associated Lotus transcripts 4

Transcript	Name	Description	Predicted domains	Domain count
Lj0g3v0062549.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Mitochondrial cytochrome c oxidase subunit II (mitochondrion) [Vicia faba] gi\|442803102\|gb\|AGC78837.1\|	Domains CYTOPLASMIC_DOMAIN G3DSA:1.10.287.90 G3DSA:2.60.40.420 IPR002429 IPR008972 IPR011759 IPR014222 NON_CYTOPLASMIC_DOMAIN PF00116 PF02790 PR01166 PS50857 PS50999 PTHR22888 PTHR22888:SF9 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF49503 SSF81464 TIGR02866 TMhelix TRANSMEMBRANE cd13912	25
Lj0g3v0175899.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Mitochondrial cytochrome c oxidase subunit II (mitochondrion) [Vicia faba] gi\|442803102\|gb\|AGC78837.1\|	Domains CYTOPLASMIC_DOMAIN G3DSA:1.10.287.90 G3DSA:2.60.40.420 IPR002429 IPR008972 IPR011759 IPR014222 NON_CYTOPLASMIC_DOMAIN PF00116 PF02790 PR01166 PS50857 PS50999 PTHR22888 PTHR22888:SF9 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF49503 SSF81464 TIGR02866 TMhelix TRANSMEMBRANE cd13912	25
Ljmitog3v0000870.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Mitochondrial cytochrome c oxidase subunit II (mitochondrion) [Vicia faba] gi\|442803102\|gb\|AGC78837.1\|	Domains CYTOPLASMIC_DOMAIN G3DSA:1.10.287.90 G3DSA:2.60.40.420 IPR002429 IPR008972 IPR011759 IPR014222 NON_CYTOPLASMIC_DOMAIN PF00116 PF02790 PR01166 PS50857 PS50999 PTHR22888 PTHR22888:SF9 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF49503 SSF81464 TIGR02866 TMhelix TRANSMEMBRANE cd13912	25
LotjaGi5g1v0122800.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cytochrome c oxidase subunit 2; TAIR: ATMG00160.1 cytochrome oxidase 2 (ChrM); Swiss-Prot: sp\|P05491\|COX2_SOYBN Cytochrome c oxidase subunit 2; TrEMBL-Plants: tr\|R4IUC9\|R4IUC9_VICFA Cytochrome c oxidase subunit 2; Found in the gene: LotjaGi5g1v0122800	Domains CYTOPLASMIC_DOMAIN G3DSA:1.10.287.90 G3DSA:2.60.40.420 IPR002429 IPR008972 IPR011759 IPR014222 IPR034210 IPR036257 NON_CYTOPLASMIC_DOMAIN PF00116 PF02790 PR01166 PS50857 PS50999 PTHR22888 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF49503 SSF81464 TIGR02866 TMhelix TRANSMEMBRANE cd13912	26

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
cd13912	CDD	1	25.00