Domain Predictions — View

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PF09138

Source: Pfam

Description

Urm1 (Ubiquitin related modifier)

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0005737 View details of GO:0005737 AmiGO InterPro QuickGO	Cellular component	Cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.	Subterm of GO:0044424
GO:0034227 View details of GO:0034227 AmiGO InterPro QuickGO	Biological process	TRNA thio-modification	The addition a sulfur atom to a nucleotide in a tRNA molecule.	Subterm of GO:0006400

Associated Lotus transcripts 4

Transcript	Name	Description	Predicted domains	Domain count
Lj1g3v3150030.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: ubiquitin-related modifier 1 homolog 1-like [Cicer arietinum] gi\|502157460\|ref\|XP_004510884.1\|	Domains G3DSA:3.10.20.30 IPR012675 IPR015221 IPR016155 PF09138 PTHR14986 PTHR14986:SF4 SSF54285	8
LotjaGi1g1v0529900.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Ubiquitin-related modifier 1 homolog; TAIR: AT3G61113.1 Ubiquitin related modifier 1; Swiss-Prot: sp\|B3H7G2\|URM12_ARATH Ubiquitin-related modifier 1 homolog 2; TrEMBL-Plants: tr\|I3SD67\|I3SD67_LOTJA Ubiquitin-related modifier 1 homolog; Found in the gene: LotjaGi1g1v0529900	Domains G3DSA:3.10.20.30 IPR012675 IPR015221 IPR016155 MF_03048 PF09138 PIRSF037379 PTHR14986 SSF54285 cd01764	10
LotjaGi1g1v0529900.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Ubiquitin-related modifier 1 homolog; TAIR: AT3G61113.1 Ubiquitin related modifier 1; Swiss-Prot: sp\|B3H7G2\|URM12_ARATH Ubiquitin-related modifier 1 homolog 2; TrEMBL-Plants: tr\|I3SD67\|I3SD67_LOTJA Ubiquitin-related modifier 1 homolog; Found in the gene: LotjaGi1g1v0529900	Domains G3DSA:3.10.20.30 IPR012675 IPR015221 IPR016155 MF_03048 PF09138 PIRSF037379 PTHR14986 SSF54285 cd01764	10
LotjaGi1g1v0529900.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Ubiquitin-related modifier 1 homolog; TAIR: AT2G45695.1 Ubiquitin related modifier 1; Swiss-Prot: sp\|A0MDQ1\|URM11_ARATH Ubiquitin-related modifier 1 homolog 1; TrEMBL-Plants: tr\|I3SD67\|I3SD67_LOTJA Ubiquitin-related modifier 1 homolog; Found in the gene: LotjaGi1g1v0529900	Domains G3DSA:3.10.20.30 IPR012675 IPR015221 IPR016155 MF_03048 PF09138 PIRSF037379 PTHR14986 SSF54285 cd01764	10

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
cd01764	CDD	1	25.00