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IPR012675 is a Beta-grasp domain superfamily.
<p>This superfamily represents a domain with a β-grasp fold and a core structure consisting of β(2)-α-β(2), which is similar to that found in ubiquitin [[cite:PUB00034476]]. Domains with this type of structure are found in the 2Fe-2S ferredoxin family (including putidaredoxin and adrenodoxin) [[cite:PUB00016348]], the 2Fe-2S ferredoxin-related family (including aldehyde reductase, and xanthine dehydrogenase) [[cite:PUB00022831]], the TGS family (including threonyl-tRNA synthetase) [[cite:PUB00006444]] and the MoaD/ThiS family (including molybdopterin, and thiamine biosynthesis sulphur carrier protein) [[cite:PUB00034477]].</p>
This description is obtained from EB-eye REST.
Transcript | Name | Description | Predicted domains | Domain count |
---|---|---|---|---|
– | Molybdopterin synthase sulfur carrier subunit [Medicago truncatula] gi|357455873|ref|XP_003598217.1| | 13 | ||
– | PREDICTED: ferredoxin-2-like [Cicer arietinum] gi|502152646|ref|XP_004509024.1| | 11 | ||
– | Succinate dehydrogenase [Mangifera indica] gi|107770481|gb|ABF83897.1| | 6 | ||
– | PREDICTED: succinate dehydrogenase [ubiquinone] gi|502089528|ref|XP_004488937.1| | 17 | ||
– | PREDICTED: developmentally-regulated GTP-binding protein 1-like [Glycine max] gi|356516297|ref|XP_003526832.1| | 25 | ||
– | PREDICTED: ubiquitin-related modifier 1 homolog 1-like [Cicer arietinum] gi|502157460|ref|XP_004510884.1| | 8 | ||
– | PREDICTED: adrenodoxin-like protein, mitochondrial-like [Cicer arietinum] gi|502103229|ref|XP_004492232.1| | 7 | ||
– | GTP pyrophosphokinase [Medicago truncatula] gi|357481159|ref|XP_003610865.1| | 8 | ||
– | PREDICTED: succinate dehydrogenase [ubiquinone] gi|502089528|ref|XP_004488937.1| | 24 | ||
– | PREDICTED: succinate dehydrogenase [ubiquinone] gi|502089528|ref|XP_004488937.1| | 23 | ||
– | PREDICTED: succinate dehydrogenase [ubiquinone] gi|502089528|ref|XP_004488937.1| | 23 | ||
– | PREDICTED: GTP pyrophosphokinase-like isoform X1 [Cicer arietinum] gi|502112635|ref|XP_004494394.1| | 25 | ||
– | PREDICTED: ferredoxin-3, chloroplastic-like isoform X1 [Cicer arietinum] gi|502120992|ref|XP_004497151.1| | 13 | ||
– | PREDICTED: threonyl-tRNA synthetase, mitochondrial-like [Glycine max] gi|356497888|ref|XP_003517788.1| | 25 | ||
– | PREDICTED: guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase-like isoform X1 [Cicer arietinum] gi|502159240|ref|XP_004511439.1| | 17 | ||
– | PREDICTED: GTP-dependent nucleic acid-binding protein engD [Glycine max] gi|356526427|ref|XP_003531819.1| | 22 | ||
– | PREDICTED: GTP-dependent nucleic acid-binding protein engD [Glycine max] gi|356526427|ref|XP_003531819.1| | 23 | ||
– | PREDICTED: xanthine dehydrogenase 1-like isoform X2 [Cicer arietinum] gi|502081768|ref|XP_004486962.1| | 39 | ||
– | PREDICTED: molybdopterin synthase sulfur carrier subunit-like [Cicer arietinum] gi|502127319|ref|XP_004499653.1| | 13 | ||
– | Ferredoxin-6 [Medicago truncatula] gi|357471641|ref|XP_003606105.1| | 10 | ||
– | PREDICTED: succinate dehydrogenase [ubiquinone] gi|502089528|ref|XP_004488937.1| | 18 | ||
– | PREDICTED: 2Fe-2S ferredoxin-like [Glycine max] gi|356547972|ref|XP_003542378.1| | 13 | ||
– | PREDICTED: 2Fe-2S ferredoxin-like [Glycine max] gi|356528054|ref|XP_003532620.1| | 4 | ||
– | 2Fe-2S ferredoxin-like superfamily protein, A,ATFD2 [Theobroma cacao] gi|508706205|gb|EOX98101.1| | 13 | ||
– | PREDICTED: 2Fe-2S ferredoxin-like isoform X1 [Cicer arietinum] gi|502080842|ref|XP_004486700.1| | 13 | ||
– | Electron carrier/ electron transporter/ iron ion binding protein [Medicago truncatula] gi|357436821|ref|XP_003588686.1| | 7 | ||
– | PREDICTED: NADH dehydrogenase [ubiquinone] gi|356539814|ref|XP_003538388.1| | 29 | ||
– | PREDICTED: obg-like ATPase 1-like [Glycine max] gi|356555899|ref|XP_003546267.1| | 24 | ||
– | PREDICTED: obg-like ATPase 1-like [Glycine max] gi|356555899|ref|XP_003546267.1| | 19 | ||
– | PREDICTED: ferredoxin-1, chloroplastic-like [Cicer arietinum] gi|502076836|ref|XP_004485473.1| | 13 | ||
– | Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; TAIR: AT5G40650.1 succinate dehydrogenase 2-2; Swiss-Prot: sp|Q8LB02|SDHB2_ARATH Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial; TrEMBL-Plants: tr|A0A0L9UIZ5|A0A0L9UIZ5_PHAAN Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Found in the gene: LotjaGi1g1v0218600_LC | 19 | ||
– | GTPase obg; TAIR: AT4G39520.1 GTP-binding protein-like protein; Swiss-Prot: sp|Q9SVA6|DRG3_ARATH Developmentally-regulated G-protein 3; TrEMBL-Plants: tr|A0A1J7H966|A0A1J7H966_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0312100 | 25 | ||
– | Ubiquitin-related modifier 1 homolog; TAIR: AT3G61113.1 Ubiquitin related modifier 1; Swiss-Prot: sp|B3H7G2|URM12_ARATH Ubiquitin-related modifier 1 homolog 2; TrEMBL-Plants: tr|I3SD67|I3SD67_LOTJA Ubiquitin-related modifier 1 homolog; Found in the gene: LotjaGi1g1v0529900 | 10 | ||
– | Ubiquitin-related modifier 1 homolog; TAIR: AT3G61113.1 Ubiquitin related modifier 1; Swiss-Prot: sp|B3H7G2|URM12_ARATH Ubiquitin-related modifier 1 homolog 2; TrEMBL-Plants: tr|I3SD67|I3SD67_LOTJA Ubiquitin-related modifier 1 homolog; Found in the gene: LotjaGi1g1v0529900 | 10 | ||
– | Ubiquitin-related modifier 1 homolog; TAIR: AT2G45695.1 Ubiquitin related modifier 1; Swiss-Prot: sp|A0MDQ1|URM11_ARATH Ubiquitin-related modifier 1 homolog 1; TrEMBL-Plants: tr|I3SD67|I3SD67_LOTJA Ubiquitin-related modifier 1 homolog; Found in the gene: LotjaGi1g1v0529900 | 10 | ||
– | Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; TAIR: AT5G40650.1 succinate dehydrogenase 2-2; Swiss-Prot: sp|Q8LB02|SDHB2_ARATH Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial; TrEMBL-Plants: tr|A0A0S3SJV1|A0A0S3SJV1_PHAAN Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Found in the gene: LotjaGi1g1v0616900 | 25 | ||
– | Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; TAIR: AT5G40650.1 succinate dehydrogenase 2-2; Swiss-Prot: sp|Q8LB02|SDHB2_ARATH Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial; TrEMBL-Plants: tr|A0A0S3SJV1|A0A0S3SJV1_PHAAN Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Found in the gene: LotjaGi1g1v0616900 | 25 | ||
– | Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; TAIR: AT5G40650.1 succinate dehydrogenase 2-2; Swiss-Prot: sp|Q8LB02|SDHB2_ARATH Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial; TrEMBL-Plants: tr|A0A0S3SJV1|A0A0S3SJV1_PHAAN Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Found in the gene: LotjaGi1g1v0617600 | 24 | ||
– | Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; TAIR: AT5G40650.1 succinate dehydrogenase 2-2; Swiss-Prot: sp|Q8LB02|SDHB2_ARATH Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial; TrEMBL-Plants: tr|A0A0S3SJV1|A0A0S3SJV1_PHAAN Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Found in the gene: LotjaGi1g1v0617600 | 24 | ||
– | Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; TAIR: AT5G40650.1 succinate dehydrogenase 2-2; Swiss-Prot: sp|Q8LB02|SDHB2_ARATH Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial; TrEMBL-Plants: tr|A0A0S3SJV1|A0A0S3SJV1_PHAAN Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Found in the gene: LotjaGi1g1v0617600 | 24 | ||
– | GTP pyrophosphokinase; TAIR: AT4G02260.2 RELA/SPOT homolog 1; Swiss-Prot: sp|P0DKG8|RSH1L_ARATH Putative GTP diphosphokinase RSH1, chloroplastic; TrEMBL-Plants: tr|A0A0B2QGP0|A0A0B2QGP0_GLYSO GTP pyrophosphokinase; Found in the gene: LotjaGi1g1v0763000 | 31 | ||
– | GTP pyrophosphokinase; TAIR: AT4G02260.2 RELA/SPOT homolog 1; Swiss-Prot: sp|P0DKG8|RSH1L_ARATH Putative GTP diphosphokinase RSH1, chloroplastic; TrEMBL-Plants: tr|A0A0B2QGP0|A0A0B2QGP0_GLYSO GTP pyrophosphokinase; Found in the gene: LotjaGi1g1v0763000 | 32 | ||
– | GTP pyrophosphokinase; TAIR: AT4G02260.2 RELA/SPOT homolog 1; Swiss-Prot: sp|P0DKG8|RSH1L_ARATH Putative GTP diphosphokinase RSH1, chloroplastic; TrEMBL-Plants: tr|A0A0B2QGP0|A0A0B2QGP0_GLYSO GTP pyrophosphokinase; Found in the gene: LotjaGi1g1v0763000 | 32 | ||
– | GTP pyrophosphokinase; TAIR: AT4G02260.2 RELA/SPOT homolog 1; Swiss-Prot: sp|P0DKG8|RSH1L_ARATH Putative GTP diphosphokinase RSH1, chloroplastic; TrEMBL-Plants: tr|A0A0B2QGP0|A0A0B2QGP0_GLYSO GTP pyrophosphokinase; Found in the gene: LotjaGi1g1v0763000 | 31 | ||
– | Ferredoxin family protein; TAIR: AT2G27510.1 ferredoxin 3; Swiss-Prot: sp|P27788|FER3_MAIZE Ferredoxin-3, chloroplastic; TrEMBL-Plants: tr|I3S8M2|I3S8M2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0765600 | 14 | ||
– | Ferredoxin family protein; TAIR: AT2G27510.1 ferredoxin 3; Swiss-Prot: sp|P27788|FER3_MAIZE Ferredoxin-3, chloroplastic; TrEMBL-Plants: tr|I3S8M2|I3S8M2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0765600 | 14 | ||
– | Threonine--tRNA ligase; TAIR: AT5G26830.1 Threonyl-tRNA synthetase; Swiss-Prot: sp|O04630|SYTM1_ARATH Threonine--tRNA ligase, mitochondrial 1; TrEMBL-Plants: tr|A0A0S3T3W6|A0A0S3T3W6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0318100 | 35 | ||
– | Threonine--tRNA ligase; TAIR: AT5G26830.1 Threonyl-tRNA synthetase; Swiss-Prot: sp|O04630|SYTM1_ARATH Threonine--tRNA ligase, mitochondrial 1; TrEMBL-Plants: tr|A0A0S3T3W6|A0A0S3T3W6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0318100 | 35 | ||
– | Threonine--tRNA ligase; TAIR: AT5G26830.1 Threonyl-tRNA synthetase; Swiss-Prot: sp|O04630|SYTM1_ARATH Threonine--tRNA ligase, mitochondrial 1; TrEMBL-Plants: tr|A0A0S3T3W6|A0A0S3T3W6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0318100 | 35 | ||
– | Guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase; TAIR: AT1G54130.1 RELA/SPOT homolog 3; Swiss-Prot: sp|Q9SYH1|RSH3C_ARATH Probable GTP diphosphokinase RSH3, chloroplastic; TrEMBL-Plants: tr|A0A0B2R105|A0A0B2R105_GLYSO Putative GTP pyrophosphokinase; Found in the gene: LotjaGi2g1v0448600 | 22 | ||
– | Guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase; TAIR: AT1G54130.1 RELA/SPOT homolog 3; Swiss-Prot: sp|Q9SYH1|RSH3C_ARATH Probable GTP diphosphokinase RSH3, chloroplastic; TrEMBL-Plants: tr|A0A0B2R105|A0A0B2R105_GLYSO Putative GTP pyrophosphokinase; Found in the gene: LotjaGi2g1v0448600 | 22 | ||
– | Guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase, putative; TAIR: AT1G54130.1 RELA/SPOT homolog 3; Swiss-Prot: sp|Q9SYH1|RSH3C_ARATH Probable GTP diphosphokinase RSH3, chloroplastic; TrEMBL-Plants: tr|A0A0R0HH22|A0A0R0HH22_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0448600 | 22 | ||
– | Guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase; TAIR: AT1G54130.1 RELA/SPOT homolog 3; Swiss-Prot: sp|Q9SYH1|RSH3C_ARATH Probable GTP diphosphokinase RSH3, chloroplastic; TrEMBL-Plants: tr|A0A0R0LJ13|A0A0R0LJ13_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0448600 | 22 | ||
– | Guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase; TAIR: AT1G54130.1 RELA/SPOT homolog 3; Swiss-Prot: sp|Q9SYH1|RSH3C_ARATH Probable GTP diphosphokinase RSH3, chloroplastic; TrEMBL-Plants: tr|A0A0R0LJ13|A0A0R0LJ13_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0448600 | 22 | ||
– | Guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase; TAIR: AT1G54130.1 RELA/SPOT homolog 3; Swiss-Prot: sp|Q9SYH1|RSH3C_ARATH Probable GTP diphosphokinase RSH3, chloroplastic; TrEMBL-Plants: tr|A0A0B2R105|A0A0B2R105_GLYSO Putative GTP pyrophosphokinase; Found in the gene: LotjaGi2g1v0448600 | 22 | ||
– | Photosynthetic NDH subcomplex B 3; TAIR: AT3G16250.1 NDH-dependent cyclic electron flow 1; Swiss-Prot: sp|Q9LU21|PNSB3_ARATH Photosynthetic NDH subunit of subcomplex B 3, chloroplastic; TrEMBL-Plants: tr|I3SQH3|I3SQH3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0019600 | 14 | ||
– | Obg-like ATPase 1; TAIR: AT1G56050.1 GTP-binding protein-like protein; Swiss-Prot: sp|P37518|YCHF_BACSU Ribosome-binding ATPase YchF; TrEMBL-Plants: tr|I3SBQ5|I3SBQ5_LOTJA Obg-like ATPase 1; Found in the gene: LotjaGi3g1v0034900 | 24 | ||
– | Obg-like ATPase 1; TAIR: AT1G56050.1 GTP-binding protein-like protein; Swiss-Prot: sp|P37518|YCHF_BACSU Ribosome-binding ATPase YchF; TrEMBL-Plants: tr|I3SBQ5|I3SBQ5_LOTJA Obg-like ATPase 1; Found in the gene: LotjaGi3g1v0034900 | 22 | ||
– | Molybdopterin synthase sulfur carrier subunit; TAIR: AT4G10100.1 co-factor for nitrate, reductase and xanthine dehydrogenase 7; Swiss-Prot: sp|Q9S7A3|MOC2A_ARATH Molybdopterin synthase sulfur carrier subunit; TrEMBL-Plants: tr|I3T2W6|I3T2W6_LOTJA Molybdopterin synthase sulfur carrier subunit; Found in the gene: LotjaGi3g1v0328000 | 11 | ||
– | Molybdopterin synthase sulfur carrier subunit; TAIR: AT4G10100.1 co-factor for nitrate, reductase and xanthine dehydrogenase 7; Swiss-Prot: sp|Q9S7A3|MOC2A_ARATH Molybdopterin synthase sulfur carrier subunit; TrEMBL-Plants: tr|I3T2W6|I3T2W6_LOTJA Molybdopterin synthase sulfur carrier subunit; Found in the gene: LotjaGi3g1v0328000 | 11 | ||
– | GTPase Obg; TAIR: AT1G72660.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q9CAI1|DRG2_ARATH Developmentally-regulated G-protein 2; TrEMBL-Plants: tr|I1KHA2|I1KHA2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0416000 | 26 | ||
– | Developmentally regulated GTP binding protein; TAIR: AT1G17470.1 developmentally regulated G-protein 1; Swiss-Prot: sp|Q9LQK0|DRG1_ARATH Developmentally-regulated G-protein 1; TrEMBL-Plants: tr|I1KHA2|I1KHA2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0416000 | 16 | ||
– | GTPase Obg; TAIR: AT1G72660.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q9CAI1|DRG2_ARATH Developmentally-regulated G-protein 2; TrEMBL-Plants: tr|I1KHA2|I1KHA2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0416000 | 24 | ||
– | GTPase Obg; TAIR: AT1G72660.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q9CAI1|DRG2_ARATH Developmentally-regulated G-protein 2; TrEMBL-Plants: tr|I1KHA2|I1KHA2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0416000 | 26 | ||
– | Ferredoxin family protein; TAIR: AT2G27510.1 ferredoxin 3; Swiss-Prot: sp|P27788|FER3_MAIZE Ferredoxin-3, chloroplastic; TrEMBL-Plants: tr|I3S8K1|I3S8K1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0477000 | 14 | ||
– | Ferredoxin family protein; TAIR: AT2G27510.1 ferredoxin 3; Swiss-Prot: sp|P27788|FER3_MAIZE Ferredoxin-3, chloroplastic; TrEMBL-Plants: tr|I3S8K1|I3S8K1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0477000 | 14 | ||
– | Ferredoxin family protein; TAIR: AT1G32550.1 2Fe-2S ferredoxin-like superfamily protein; Swiss-Prot: sp|P08451|FER2_SYNP6 Ferredoxin-2; TrEMBL-Plants: tr|G7JGG5|G7JGG5_MEDTR 2Fe-2S ferredoxin superfamily protein; Found in the gene: LotjaGi4g1v0188100 | 12 | ||
– | 2Fe-2S ferredoxin; TAIR: AT4G21090.1 MITOCHONDRIAL FERREDOXIN 2; Swiss-Prot: sp|Q8S904|MFDX2_ARATH Adrenodoxin-like protein 2, mitochondrial; TrEMBL-Plants: tr|A0A067KCK0|A0A067KCK0_JATCU Uncharacterized protein; Found in the gene: LotjaGi4g1v0320900 | 14 | ||
– | Ferredoxin; TAIR: AT1G60950.1 2Fe-2S ferredoxin-like superfamily protein; Swiss-Prot: sp|Q43517|FER1_SOLLC Ferredoxin-1, chloroplastic; TrEMBL-Plants: tr|I3S4Y2|I3S4Y2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0387900 | 14 | ||
– | 2Fe-2S ferredoxin; TAIR: AT4G21090.1 MITOCHONDRIAL FERREDOXIN 2; Swiss-Prot: sp|Q8S904|MFDX2_ARATH Adrenodoxin-like protein 2, mitochondrial; TrEMBL-Plants: tr|I3SN88|I3SN88_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0451800 | 14 | ||
– | Photosynthetic NDH subcomplex B 3; TAIR: AT4G32590.4 2Fe-2S ferredoxin-like superfamily protein; Swiss-Prot: sp|Q9LU21|PNSB3_ARATH Photosynthetic NDH subunit of subcomplex B 3, chloroplastic; TrEMBL-Plants: tr|I3SH71|I3SH71_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0062700 | 8 | ||
– | Photosynthetic NDH subcomplex B 3; TAIR: AT4G32590.1 2Fe-2S ferredoxin-like superfamily protein; Swiss-Prot: sp|Q9LU21|PNSB3_ARATH Photosynthetic NDH subunit of subcomplex B 3, chloroplastic; TrEMBL-Plants: tr|I3SH71|I3SH71_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0062700 | 8 | ||
– | Obg-like ATPase 1; TAIR: AT1G30580.1 GTP binding protein; Swiss-Prot: sp|Q9SA73|OLA1_ARATH Obg-like ATPase 1; TrEMBL-Plants: tr|I3T7Y1|I3T7Y1_LOTJA Obg-like ATPase 1; Found in the gene: LotjaGi6g1v0271200 | 27 |
A list of co-occurring predicted domains within the L. japonicus gene space:
Predicted domain | Source | Observations | Saturation (%) |
---|---|---|---|
cd04867 | CDD | 1 | 1.37 |