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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0529900 |
| Transcript ID | LotjaGi1g1v0529900.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ubiquitin-related modifier 1 homolog; TAIR: AT3G61113.1 Ubiquitin related modifier 1; Swiss-Prot: sp|B3H7G2|URM12_ARATH Ubiquitin-related modifier 1 homolog 2; TrEMBL-Plants: tr|I3SD67|I3SD67_LOTJA Ubiquitin-related modifier 1 homolog; Found in the gene: LotjaGi1g1v0529900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:105703828..105704836) extracted from Lotus japonicus Gifu genome v1.2.
TGTAAAATGGCTGAAACATTCAGAGGAGGCTTGGAGCTTCTTTGTGACTCTAAGAAGATTCATAATGTCAATGTTGAACA ACAAAATGGAGAAGACAAGGTAGTATATGACTTCACAAATGATTCAACTATGTTATTTGTGGAAACCTTGCCATTCTCAT AGGGTTATCTTCATACTTGTCAGTTAACCATGAAAGGTTTGCTTTCCTGGGTGCGCACCAACTTGATTAAGGAGAGGCCT GAAATGTTCATGAAAGGAGATACTGTGTAAGTTTTATAATATAAATACATCTGAATTATGCATTATTGGTAAGAAGAACA AGGTCCTCTAAACTGAACTTATTTCTAAAGCTAAAGTATGGATGCATCTACCACCAATTTGATATAACATGCATACTGAT CTTAATTCATAAATGATTGAGTGGTGGATACACTTGCTAATTAGTCATGTTCTGCATTCACACCTGTCGAAATGTTTTAG CGGACAATTGAAATTGAGGAGAAAGAAATGTTTATACTGAAGCAGAAGCTGATTCAGTTATAGGTAATCTTAACCGCAAT GATACATGACTCGAATAATGTCACCTACGAATTTAACGAAATGGTTATTTCCACATACCTCTTAACAGCCATACATGTGG GCTCCAACAGTTAACAAGTAAATTTCAAAATTTTCCAATAAATACACTGGGCTGCGAAATTCGTTTCGAGTCATTTACCA TTTTCCTAATCTTAATCAGTTTCTGGATCAATATGAGCATTCATTTCTCCTCAATTTCACTTGTCTACTAAAAAAACTTT CGATGGCATTAATGTAGAACTATGTTAATACTATCTTTACATGGGAACCGAACTATGTTACAATCTTTCCTGCATGTGGT TTGTCTTGCAGGAGACCTGGAGTTCTTGTCCTTGTGAATGATTGTGATTGGGAGCTAAGTGGTCAGCTAAGCACATCACT GGAAGATAAAGATGTGGTGGTTTTTATATCAACCTTACACGGTGGGTAG
CDS sequence (LotjaGi1g1v0529900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGAAACATTCAGAGGAGGCTTGGAGCTTCTTTGTGACTCTAAGAAGATTCATAATGTCAATGTTGAACAACAAAA TGGAGAAGACAAGTTAACCATGAAAGGTTTGCTTTCCTGGGTGCGCACCAACTTGATTAAGGAGAGGCCTGAAATGTTCA TGAAAGGAGATACTGTGAGACCTGGAGTTCTTGTCCTTGTGAATGATTGTGATTGGGAGCTAAGTGGTCAGCTAAGCACA TCACTGGAAGATAAAGATGTGGTGGTTTTTATATCAACCTTACACGGTGGGTAG
Protein sequence (LotjaGi1g1v0529900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAETFRGGLELLCDSKKIHNVNVEQQNGEDKLTMKGLLSWVRTNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLST SLEDKDVVVFISTLHGG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 1 | 97 | 97 | 1.9E-37 | ||
| Hamap | 1 | 97 | 97 | 31.698 | ||
| Gene3D | 2 | 97 | 96 | 6.4E-36 | ||
| PANTHER | 4 | 97 | 94 | 5.8E-46 | ||
| CDD | 5 | 97 | 93 | 1.80732E-46 | ||
| Pfam | 5 | 97 | 93 | 2.1E-35 | ||
| SUPERFAMILY | 5 | 97 | 93 | 9.81E-27 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. | ||
| Biological process | TRNA thio-modification | The addition a sulfur atom to a nucleotide in a tRNA molecule. |
Expression pattern of LotjaGi1g1v0529900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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