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GO:0006400

View this GO term in other databases

Overview

Field Value
Namespace Biological process
Short description TRNA modification
Full defintion The covalent alteration of one or more nucleotides within a tRNA molecule to produce a tRNA molecule with a sequence that differs from that coded genetically.
Subterm of

Relationships

The relationship of GO:0006400 with other GO terms.

Relationship type GO terms
Is a
Regulates n.a.
Part of n.a.
Positively regulates n.a.
Negatively regulates n.a.

Ancestor tree

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Additional data

This table contains additional metadata associated with the GO entry's definition field.

Field Value
GOCcurators

Associated Lotus transcripts 37

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Transcript Name Description GO terms GO count
Lj0g3v0081089.1
– PREDICTED: phosphoglycerate kinase-like [Glycine max] gi|356551092|ref|XP_003543912.1|
GO terms
2
Lj0g3v0352669.1
– TRNA modification GTPase mnmE [Medicago truncatula] gi|358349532|ref|XP_003638789.1|
GO terms
3
Lj1g3v1515820.1
– PREDICTED: queuine tRNA-ribosyltransferase-like [Glycine max] gi|356518457|ref|XP_003527895.1|
GO terms
2
Lj1g3v4103630.1
– PREDICTED: queuine tRNA-ribosyltransferase-like [Glycine max] gi|356510157|ref|XP_003523806.1|
GO terms
2
Lj1g3v4103630.2
– PREDICTED: queuine tRNA-ribosyltransferase-like [Glycine max] gi|356510157|ref|XP_003523806.1|
GO terms
2
Lj2g3v1728760.1
– PREDICTED: CDK5RAP1-like protein-like [Glycine max] gi|356540793|ref|XP_003538869.1|
GO terms
3
Lj3g3v0640360.1
– PREDICTED: tRNA (guanine-N(7)-)-methyltransferase-like [Glycine max] gi|356503164|ref|XP_003520381.1|
GO terms
2
Lj3g3v2317870.1
– PREDICTED: tRNA (guanine-N(7)-)-methyltransferase-like [Glycine max] gi|356503164|ref|XP_003520381.1|
GO terms
2
Lj3g3v3755420.1
– PREDICTED: CDKAL1-like protein-like [Glycine max] gi|356542899|ref|XP_003539902.1|
GO terms
3
Lj5g3v0523190.1
– PREDICTED: tRNA(His) guanylyltransferase 1-like isoform X1 [Cicer arietinum] gi|502113614|ref|XP_004494705.1|
GO terms
3
Lj5g3v0523190.2
– PREDICTED: tRNA(His) guanylyltransferase 1-like isoform X1 [Cicer arietinum] gi|502113614|ref|XP_004494705.1|
GO terms
3
Lj6g3v0291920.1
– PREDICTED: tRNA(His) guanylyltransferase 1-like isoform X1 [Cicer arietinum] gi|502113614|ref|XP_004494705.1|
GO terms
3
LotjaGi1g1v0246400.1
– TRNA modification GTPase mnmE; TAIR: AT1G78010.1 tRNA modification GTPase; Swiss-Prot: sp|Q3MBM5|MNME_ANAVT tRNA modification GTPase MnmE; TrEMBL-Plants: tr|G8A389|G8A389_MEDTR tRNA modification GTPase trmE; Found in the gene: LotjaGi1g1v0246400
GO terms
3
LotjaGi1g1v0246400.2
– TRNA modification GTPase mnmE; TAIR: AT1G78010.1 tRNA modification GTPase; Swiss-Prot: sp|Q3MBM5|MNME_ANAVT tRNA modification GTPase MnmE; TrEMBL-Plants: tr|K7KJB6|K7KJB6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0246400
GO terms
3
LotjaGi1g1v0340000.1
– Queuine tRNA-ribosyltransferase; TAIR: AT1G72430.1 SAUR-like auxin-responsive protein family; Swiss-Prot: sp|Q28HC6|TGT_XENTR Queuine tRNA-ribosyltransferase catalytic subunit 1; TrEMBL-Plants: tr|A0A0R0JIE5|A0A0R0JIE5_SOYBN Queuine tRNA-ribosyltransferase catalytic subunit 1; Found in the gene: LotjaGi1g1v0340000
GO terms
2
LotjaGi1g1v0340000.2
– Queuine tRNA-ribosyltransferase; TAIR: AT3G26700.1 Protein kinase superfamily protein; Swiss-Prot: sp|Q28HC6|TGT_XENTR Queuine tRNA-ribosyltransferase catalytic subunit 1; TrEMBL-Plants: tr|A0A0R0KCQ4|A0A0R0KCQ4_SOYBN Queuine tRNA-ribosyltransferase catalytic subunit 1; Found in the gene: LotjaGi1g1v0340000
GO terms
2
LotjaGi1g1v0340000.3
– Queuine tRNA-ribosyltransferase; TAIR: AT3G26700.1 Protein kinase superfamily protein; Swiss-Prot: sp|Q7SYK1|TGT_DANRE Queuine tRNA-ribosyltransferase catalytic subunit 1; TrEMBL-Plants: tr|A0A0R0KCQ4|A0A0R0KCQ4_SOYBN Queuine tRNA-ribosyltransferase catalytic subunit 1; Found in the gene: LotjaGi1g1v0340000
GO terms
2
LotjaGi1g1v0398300.1
– TRNA (guanine-N(7)-)-methyltransferase; TAIR: AT5G24840.1 tRNA (guanine-N-7) methyltransferase; Swiss-Prot: sp|Q8GXB7|TRMB_ARATH tRNA (guanine-N(7)-)-methyltransferase; TrEMBL-Plants: tr|I3SH34|I3SH34_LOTJA tRNA (guanine-N(7)-)-methyltransferase; Found in the gene: LotjaGi1g1v0398300
GO terms
2
LotjaGi1g1v0510800.1
– Queuine tRNA-ribosyltransferase; TAIR: AT3G54050.1 high cyclic electron flow 1; Swiss-Prot: sp|Q28DX0|QTRT2_XENTR Queuine tRNA-ribosyltransferase accessory subunit 2; TrEMBL-Plants: tr|C6T7F2|C6T7F2_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0510800
GO terms
3
LotjaGi1g1v0510800.2
– Queuine tRNA-ribosyltransferase; TAIR: AT3G54050.1 high cyclic electron flow 1; Swiss-Prot: sp|Q9H974|QTRT2_HUMAN Queuine tRNA-ribosyltransferase accessory subunit 2; TrEMBL-Plants: tr|C6T7F2|C6T7F2_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0510800
GO terms
3
LotjaGi2g1v0074400.1
– Phosphoglycerate kinase; TAIR: AT3G12780.1 phosphoglycerate kinase 1; Swiss-Prot: sp|Q31P73|PGK_SYNE7 Phosphoglycerate kinase; TrEMBL-Plants: tr|K7LXU3|K7LXU3_SOYBN Phosphoglycerate kinase; Found in the gene: LotjaGi2g1v0074400
GO terms
2
LotjaGi2g1v0074400.2
– Phosphoglycerate kinase; TAIR: AT3G12780.1 phosphoglycerate kinase 1; Swiss-Prot: sp|Q31P73|PGK_SYNE7 Phosphoglycerate kinase; TrEMBL-Plants: tr|K7LXU3|K7LXU3_SOYBN Phosphoglycerate kinase; Found in the gene: LotjaGi2g1v0074400
GO terms
2
LotjaGi2g1v0074400.3
– Phosphoglycerate kinase; TAIR: AT3G12780.1 phosphoglycerate kinase 1; Swiss-Prot: sp|Q31P73|PGK_SYNE7 Phosphoglycerate kinase; TrEMBL-Plants: tr|K7LXU9|K7LXU9_SOYBN Phosphoglycerate kinase; Found in the gene: LotjaGi2g1v0074400
GO terms
2
LotjaGi2g1v0385400.1
– TRNA-2-methylthio-N(6)-dimethylallyladenosine synthase; TAIR: AT4G36390.1 Methylthiotransferase; Swiss-Prot: sp|Q8H0V1|CK5P1_ARATH CDK5RAP1-like protein; TrEMBL-Plants: tr|G7KGB3|G7KGB3_MEDTR Radical SAM methylthiotransferase, MiaB/RimO family protein; Found in the gene: LotjaGi2g1v0385400
GO terms
3
LotjaGi2g1v0385400.2
– TRNA-2-methylthio-N(6)-dimethylallyladenosine synthase; TAIR: AT4G36390.1 Methylthiotransferase; Swiss-Prot: sp|Q2R1U4|CK5P1_ORYSJ CDK5RAP1-like protein; TrEMBL-Plants: tr|K7LNH5|K7LNH5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0385400
GO terms
3
LotjaGi2g1v0385400.3
– TRNA-2-methylthio-N(6)-dimethylallyladenosine synthase; TAIR: AT4G36390.1 Methylthiotransferase; Swiss-Prot: sp|Q2R1U4|CK5P1_ORYSJ CDK5RAP1-like protein; TrEMBL-Plants: tr|K7LNH5|K7LNH5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0385400
GO terms
3
LotjaGi2g1v0385400.4
– TRNA-2-methylthio-N(6)-dimethylallyladenosine synthase; TAIR: AT4G36390.1 Methylthiotransferase; Swiss-Prot: sp|Q2R1U4|CK5P1_ORYSJ CDK5RAP1-like protein; TrEMBL-Plants: tr|K7LNH5|K7LNH5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0385400
GO terms
3
LotjaGi2g1v0443500.1
– THUMP domain-containing protein 1 like; TAIR: AT5G12410.1 THUMP domain-containing protein; Swiss-Prot: sp|Q99J36|THUM1_MOUSE THUMP domain-containing protein 1; TrEMBL-Plants: tr|G7K999|G7K999_MEDTR THUMP domain protein; Found in the gene: LotjaGi2g1v0443500
GO terms
2
LotjaGi3g1v0073800.1
– TRNA (Guanine-N(7)-)-methyltransferase; TAIR: AT5G17660.1 tRNA (guanine-N-7) methyltransferase; Swiss-Prot: sp|Q2JJQ0|TRMB_SYNJB tRNA (guanine-N(7)-)-methyltransferase; TrEMBL-Plants: tr|I1JMG9|I1JMG9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0073800
GO terms
2
LotjaGi3g1v0556600.1
– TRNA-2-methylthio-N(6)-dimethylallyladenosine synthase; TAIR: AT1G72090.1 Methylthiotransferase; Swiss-Prot: sp|Q6P4Y0|CDKAL_XENTR Threonylcarbamoyladenosine tRNA methylthiotransferase; TrEMBL-Plants: tr|I1LNN6|I1LNN6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0556600
GO terms
3
LotjaGi3g1v0556600.2
– TRNA-2-methylthio-N(6)-dimethylallyladenosine synthase; TAIR: AT1G72090.1 Methylthiotransferase; Swiss-Prot: sp|Q6NS26|CDKAL_XENLA Threonylcarbamoyladenosine tRNA methylthiotransferase; TrEMBL-Plants: tr|I1LNN6|I1LNN6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0556600
GO terms
3
LotjaGi5g1v0055000.1
– TRNA(His) guanylyltransferase; TAIR: AT2G32320.1 tRNAHis guanylyltransferase; Swiss-Prot: sp|F4IRQ5|THG1_ARATH tRNA(His) guanylyltransferase 1; TrEMBL-Plants: tr|A0A151R6C7|A0A151R6C7_CAJCA Putative tRNA(His) guanylyltransferase; Found in the gene: LotjaGi5g1v0055000
GO terms
3
LotjaGi5g1v0055000.2
– TRNA(His) guanylyltransferase; TAIR: AT2G32320.1 tRNAHis guanylyltransferase; Swiss-Prot: sp|F4IRQ5|THG1_ARATH tRNA(His) guanylyltransferase 1; TrEMBL-Plants: tr|A0A151R6C7|A0A151R6C7_CAJCA Putative tRNA(His) guanylyltransferase; Found in the gene: LotjaGi5g1v0055000
GO terms
3
LotjaGi5g1v0347300.1
– THUMP domain-containing protein 1; TAIR: AT1G09290.1 hypothetical protein; Swiss-Prot: sp|Q9VZD8|THUM1_DROME THUMP domain-containing protein 1 homolog; TrEMBL-Plants: tr|D2KTV6|D2KTV6_LOTJA Putative uncharacterized protein; Found in the gene: LotjaGi5g1v0347300
GO terms
2
LotjaGi5g1v0347300.2
– THUMP domain-containing protein 1; TAIR: AT1G09290.1 hypothetical protein; Swiss-Prot: sp|Q9VZD8|THUM1_DROME THUMP domain-containing protein 1 homolog; TrEMBL-Plants: tr|D2KTV6|D2KTV6_LOTJA Putative uncharacterized protein; Found in the gene: LotjaGi5g1v0347300
GO terms
2
LotjaGi5g1v0347300.3
– THUMP domain-containing protein 1; TAIR: AT1G09290.1 hypothetical protein; Swiss-Prot: sp|Q9VZD8|THUM1_DROME THUMP domain-containing protein 1 homolog; TrEMBL-Plants: tr|I3SZ74|I3SZ74_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0347300
GO terms
2
LotjaGi6g1v0041500.1
– TRNA(His) guanylyltransferase; TAIR: AT2G32320.1 tRNAHis guanylyltransferase; Swiss-Prot: sp|F4ISV6|THG2_ARATH tRNA(His) guanylyltransferase 2; TrEMBL-Plants: tr|A0A0S3T8E1|A0A0S3T8E1_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0041500
GO terms
3

Co-occuring GO terms 1

A list of co-occurring GO terms within the L. japonicus gene space:

GO term Namespace Name Observations Saturation (%)
GO:0008193
Molecular function TRNA guanylyltransferase activity 1 2.70