Domain Predictions — View

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PIRSF004967

Source: PIRSF

Description

No description is available for this domain.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0017183 View details of GO:0017183 AmiGO InterPro QuickGO	Biological process	Peptidyl-diphthamide biosynthetic process from peptidyl-histidine	The modification of peptidyl-histidine to 2'-(3-carboxamido-3-(trimethylammonio)propyl)-L-histidine, known as diphthamide, found in translation elongation factor EF-2. The process occurs in eukaryotes and archaea but not eubacteria.	Subterm of GO:0017182 GO:0044249 GO:1900247

Associated Lotus transcripts 3

Transcript	Name	Description	Predicted domains	Domain count
Lj2g3v2124830.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: diphthamide biosynthesis protein 1-like [Cicer arietinum] gi\|502159294\|ref\|XP_004511457.1\|	Domains IPR016435 PF01866 PIRSF004967 PTHR10762 PTHR10762:SF1 SFLDS00032 TIGR00322 mobidb-lite	8
LotjaGi2g1v0448400.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Diphthamide biosynthesis protein; TAIR: AT5G62030.1 diphthamide synthesis DPH2 family protein; Swiss-Prot: sp\|Q54PW5\|DPH1_DICDI Diphthamide biosynthesis protein 1; TrEMBL-Plants: tr\|G7K6J3\|G7K6J3_MEDTR Diphthamide biosynthesis protein; Found in the gene: LotjaGi2g1v0448400	Domains G3DSA:3.40.50.11840 G3DSA:3.40.50.11850 G3DSA:3.40.50.11860 IPR016435 IPR035435 IPR042263 IPR042264 IPR042265 NON_CYTOPLASMIC_DOMAIN PF01866 PIRSF004967 PTHR10762 PTHR10762:SF1 SFLDS00032 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SignalP-noTM TIGR00322	20
LotjaGi2g1v0448400.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Diphthamide biosynthesis protein; TAIR: AT5G62030.1 diphthamide synthesis DPH2 family protein; Swiss-Prot: sp\|Q54PW5\|DPH1_DICDI Diphthamide biosynthesis protein 1; TrEMBL-Plants: tr\|G7K6J3\|G7K6J3_MEDTR Diphthamide biosynthesis protein; Found in the gene: LotjaGi2g1v0448400	Domains G3DSA:3.40.50.11840 G3DSA:3.40.50.11850 G3DSA:3.40.50.11860 IPR016435 IPR035435 IPR042263 IPR042264 IPR042265 NON_CYTOPLASMIC_DOMAIN PF01866 PIRSF004967 PTHR10762 PTHR10762:SF1 SFLDS00032 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SignalP-noTM TIGR00322	20

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
TIGR00322	TIGRFAM	1	33.33