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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0448400 |
| Transcript ID | LotjaGi2g1v0448400.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Diphthamide biosynthesis protein; TAIR: AT5G62030.1 diphthamide synthesis DPH2 family protein; Swiss-Prot: sp|Q54PW5|DPH1_DICDI Diphthamide biosynthesis protein 1; TrEMBL-Plants: tr|G7K6J3|G7K6J3_MEDTR Diphthamide biosynthesis protein; Found in the gene: LotjaGi2g1v0448400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:94223246..94224595) extracted from Lotus japonicus Gifu genome v1.2.
CCTCCGATAAACCCGCCGCCACCAGAACCAGGCCAAAGCGTTTCGTGAAGAACCAAATCCCCGATTCAATCCTCAACGAC CCTCTCCTCAACGCCGCCATATCCATTCTCCCTTCCAACTACAGCTTCGAAGTCCACAAATGCGTCTGGCGCGTCCTCTC CACCGGAGCCAAGCGCGTCGCTCTCCAGTTCCCTGAAGGTCTCCTCATGTACTCTCTAGTTCTCTCTGACATCTTCACCA CCTTCGCCGCCGTCTCCCACTGCTTCGTCCTCGGTGACGTCACCTACGGCGCCTGCTGCGTCGACGACTTCTCCGCCGTC GCTCTTGGCGCCGATCTGCTCATTCACTACGGCCACAGCTGCCTAGTCCCCATCGATTCCACCACCATCCCCTGCCTCTA CGTCTTTGTCGACATCAAAATCAATCTCGACCACTTAGTCGACACAGTCAGGATGAACCTTGATGGCATAACCAGCGTCG TCCTCGCCGGCACGATTCAGTTCGCTTCTGCAATTCGGGCTGCGAAGCCTGAGTTGGAGAAATTAGGGTTTAGGGTTTTG GTCCCGCAATCGAAGCCGCTCTCCGCCGGCGAGGTTCTCGGCTGCACCGCGCCCAAGGTGGCGGTGAATACCTTTGATGA TAGTAATGAGAGTGTTTTGGTGTTTGTAGCGGATGGGAGGTTTCACCTTGAGGCGTTCATGATAGCGAATCCGGCAATGA AGGCTTTTAGGTATGACCCCTATATGGGGAACTTGTTTCTGGAGGAATATGATCATGTGGGCATGAAGAGATCGAGGAAA GATGCGATTTCGAAAGCAAAAGGGGCTAGGAATTGGGGTGTTGTTTTGGGGACATTGGGGAGGCAAGGGAATCCAAAGAT TTTAGAGAGGTTGGAGAAGAAGATGAGGGATAAAGGGTTGGATTATACTGTGGTTTTGATGTCTGAGATAAGCCCTACGA GGATCGCTCTGTTTGAGGACTCTCTTGATGCTTGGATTCAGATTGCTTGTCCTCGGTTATCGATTGACTGGGGTGATGCA TTTGGAAAACCAGTGCTTACTCCTTTCGAGGCAGAGATTGCGCTTGGTGTCATACCTGGTTGGTGGGAGAAAACTGAGGT GTTGAAACAGGATTGTGAAGATGGTGGTGCAGATTGCAAGAAGAGTGACTCTTGCGTTGATTGTGGTTGCGGAGATGTAA AAGGAACGGAAGATTTTGGCGGAGATTATCCGATGGACTACTATGCTCAAGATGGCGGCGAGTGGAATTCCTCTTATGTC AAGAAATCTTCTCGTCCTTCAAGGAAAATTTCTGTATCTCCTGTTGCTAATAGTGTCATTTCCAGTTAGT
CDS sequence (LotjaGi2g1v0448400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTACTCTCTAGTTCTCTCTGACATCTTCACCACCTTCGCCGCCGTCTCCCACTGCTTCGTCCTCGGTGACGTCACCTA CGGCGCCTGCTGCGTCGACGACTTCTCCGCCGTCGCTCTTGGCGCCGATCTGCTCATTCACTACGGCCACAGCTGCCTAG TCCCCATCGATTCCACCACCATCCCCTGCCTCTACGTCTTTGTCGACATCAAAATCAATCTCGACCACTTAGTCGACACA GTCAGGATGAACCTTGATGGCATAACCAGCGTCGTCCTCGCCGGCACGATTCAGTTCGCTTCTGCAATTCGGGCTGCGAA GCCTGAGTTGGAGAAATTAGGGTTTAGGGTTTTGGTCCCGCAATCGAAGCCGCTCTCCGCCGGCGAGGTTCTCGGCTGCA CCGCGCCCAAGGTGGCGGTGAATACCTTTGATGATAGTAATGAGAGTGTTTTGGTGTTTGTAGCGGATGGGAGGTTTCAC CTTGAGGCGTTCATGATAGCGAATCCGGCAATGAAGGCTTTTAGGTATGACCCCTATATGGGGAACTTGTTTCTGGAGGA ATATGATCATGTGGGCATGAAGAGATCGAGGAAAGATGCGATTTCGAAAGCAAAAGGGGCTAGGAATTGGGGTGTTGTTT TGGGGACATTGGGGAGGCAAGGGAATCCAAAGATTTTAGAGAGGTTGGAGAAGAAGATGAGGGATAAAGGGTTGGATTAT ACTGTGGTTTTGATGTCTGAGATAAGCCCTACGAGGATCGCTCTGTTTGAGGACTCTCTTGATGCTTGGATTCAGATTGC TTGTCCTCGGTTATCGATTGACTGGGGTGATGCATTTGGAAAACCAGTGCTTACTCCTTTCGAGGCAGAGATTGCGCTTG GTGTCATACCTGGTTGGTGGGAGAAAACTGAGGTGTTGAAACAGGATTGTGAAGATGGTGGTGCAGATTGCAAGAAGAGT GACTCTTGCGTTGATTGTGGTTGCGGAGATGTAAAAGGAACGGAAGATTTTGGCGGAGATTATCCGATGGACTACTATGC TCAAGATGGCGGCGAGTGGAATTCCTCTTATGTCAAGAAATCTTCTCGTCCTTCAAGGAAAATTTCTGTATCTCCTGTTG CTAATAGTGTCATTTCCAGTTAG
Protein sequence (LotjaGi2g1v0448400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYSLVLSDIFTTFAAVSHCFVLGDVTYGACCVDDFSAVALGADLLIHYGHSCLVPIDSTTIPCLYVFVDIKINLDHLVDT VRMNLDGITSVVLAGTIQFASAIRAAKPELEKLGFRVLVPQSKPLSAGEVLGCTAPKVAVNTFDDSNESVLVFVADGRFH LEAFMIANPAMKAFRYDPYMGNLFLEEYDHVGMKRSRKDAISKAKGARNWGVVLGTLGRQGNPKILERLEKKMRDKGLDY TVVLMSEISPTRIALFEDSLDAWIQIACPRLSIDWGDAFGKPVLTPFEAEIALGVIPGWWEKTEVLKQDCEDGGADCKKS DSCVDCGCGDVKGTEDFGGDYPMDYYAQDGGEWNSSYVKKSSRPSRKISVSPVANSVISS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 19 | 19 | - | – | |
| Gene3D | 1 | 68 | 68 | 1.1E-97 | ||
| Phobius | 1 | 19 | 19 | - | – | |
| PANTHER | 1 | 367 | 367 | 2.8E-139 | – | |
| PIRSF | 1 | 362 | 362 | 1.8E-97 | ||
| Phobius | 1 | 3 | 3 | - | – | |
| PANTHER | 1 | 367 | 367 | 2.8E-139 | ||
| TIGRFAM | 2 | 293 | 292 | 2.8E-95 | ||
| Pfam | 2 | 300 | 299 | 6.3E-105 | ||
| Phobius | 4 | 14 | 11 | - | – | |
| Phobius | 15 | 19 | 5 | - | – | |
| SFLD | 17 | 367 | 351 | 0.0 | ||
| Phobius | 20 | 380 | 361 | - | – | |
| Gene3D | 69 | 189 | 121 | 1.1E-97 | ||
| Gene3D | 190 | 291 | 102 | 1.1E-97 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Peptidyl-diphthamide biosynthetic process from peptidyl-histidine | The modification of peptidyl-histidine to 2'-(3-carboxamido-3-(trimethylammonio)propyl)-L-histidine, known as diphthamide, found in translation elongation factor EF-2. The process occurs in eukaryotes and archaea but not eubacteria. |
Expression pattern of LotjaGi2g1v0448400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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