Domain Predictions — View

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PS01009

Source: ProSitePatterns

Description

CRISP family signature 1.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0005576 View details of GO:0005576 AmiGO InterPro QuickGO	Cellular component	Extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.	Subterm of GO:0005575

Associated Lotus transcripts 7

Transcript	Name	Description	Predicted domains	Domain count
Lj4g3v2068350.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: pathogenesis-related protein PR-1-like [Glycine max] gi\|356564862\|ref\|XP_003550666.1\|	Domains G3DSA:3.40.33.10 IPR001283 IPR002413 IPR014044 IPR018244 NON_CYTOPLASMIC_DOMAIN PF00188 PR00837 PR00838 PS01009 PS01010 PTHR10334 PTHR10334:SF204 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SM00198 SSF55797 SignalP-TM_EUK SignalP-TM_GRAM_POSITIVE TMhelix cd05381	23
Lj6g3v2170740.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Pathogenesis-related protein 1a [Medicago truncatula] gi\|357446161\|ref\|XP_003593358.1\|	Domains G3DSA:3.40.33.10 IPR001283 IPR002413 IPR014044 IPR018244 NON_CYTOPLASMIC_DOMAIN PF00188 PR00837 PR00838 PS01009 PS01010 PTHR10334 PTHR10334:SF223 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SM00198 SSF55797 SignalP-noTM_EUK cd05381	21
LotjaGi4g1v0297700.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Pathogenesis-related protein 1; TAIR: AT4G25780.1 CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein; Swiss-Prot: sp\|Q40374\|PR1_MEDTR Pathogenesis-related protein PR-1; TrEMBL-Plants: tr\|I3SHL8\|I3SHL8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0297700	Domains G3DSA:3.40.33.10 IPR001283 IPR002413 IPR014044 IPR018244 IPR035940 NON_CYTOPLASMIC_DOMAIN PF00188 PR00837 PR00838 PS01009 PS01010 PTHR10334 PTHR10334:SF417 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SM00198 SSF55797 SignalP-TM SignalP-noTM cd05381	23
LotjaGi4g1v0297800.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Pathogenesis-related protein 1; TAIR: AT4G30320.1 CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein; Swiss-Prot: sp\|Q40374\|PR1_MEDTR Pathogenesis-related protein PR-1; TrEMBL-Plants: tr\|I3SXI8\|I3SXI8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0297800	Domains G3DSA:3.40.33.10 IPR001283 IPR002413 IPR014044 IPR018244 IPR035940 NON_CYTOPLASMIC_DOMAIN PF00188 PR00837 PR00838 PS01009 PS01010 PTHR10334 PTHR10334:SF430 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SM00198 SSF55797 SignalP-TM TMhelix cd05381	23
LotjaGi4g1v0297800.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Pathogenesis-related protein 1; TAIR: AT4G30320.1 CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein; Swiss-Prot: sp\|Q40374\|PR1_MEDTR Pathogenesis-related protein PR-1; TrEMBL-Plants: tr\|I3SXI8\|I3SXI8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0297800	Domains G3DSA:3.40.33.10 IPR001283 IPR002413 IPR014044 IPR018244 IPR035940 NON_CYTOPLASMIC_DOMAIN PF00188 PR00837 PR00838 PS01009 PS01010 PTHR10334 PTHR10334:SF430 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SM00198 SSF55797 SignalP-TM TMhelix cd05381	23
LotjaGi5g1v0071700.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Pathogenesis-related protein 1; TAIR: AT3G09590.1 CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein; Swiss-Prot: sp\|Q41359\|PR1_SAMNI Pathogenesis-related protein PR-1 type; TrEMBL-Plants: tr\|A0A072VJU7\|A0A072VJU7_MEDTR CAP, cysteine-rich secretory protein, antigen 5; Found in the gene: LotjaGi5g1v0071700	Domains G3DSA:3.40.33.10 IPR001283 IPR014044 IPR018244 IPR035940 NON_CYTOPLASMIC_DOMAIN PF00188 PR00837 PS01009 PTHR10334 PTHR10334:SF432 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SM00198 SSF55797 SignalP-TM SignalP-noTM TMhelix cd05381 mobidb-lite	22
LotjaGi6g1v0345200.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Pathogenesis-related protein 1-like; TAIR: AT4G33720.1 CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein; Swiss-Prot: sp\|Q9ZNS4\|PRB1_ARATH Pathogenesis-related protein 1; TrEMBL-Plants: tr\|I3S886\|I3S886_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0345200	Domains G3DSA:3.40.33.10 IPR001283 IPR002413 IPR014044 IPR018244 IPR035940 NON_CYTOPLASMIC_DOMAIN PF00188 PR00837 PR00838 PS01009 PS01010 PTHR10334 PTHR10334:SF436 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SM00198 SSF55797 SignalP-noTM cd05381	22

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
cd05381	CDD	1	14.29