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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0345200 |
| Transcript ID | LotjaGi6g1v0345200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pathogenesis-related protein 1-like; TAIR: AT4G33720.1 CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein; Swiss-Prot: sp|Q9ZNS4|PRB1_ARATH Pathogenesis-related protein 1; TrEMBL-Plants: tr|I3S886|I3S886_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0345200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:65788558..65789658) extracted from Lotus japonicus Gifu genome v1.2.
GTTTTTCCAGTCACACACACATGCACTATCATTTTGAAAATTCTATGTAGTACTAGTCTTGCTCACGAGCTAGCCAGCCA CCTTAAGTACAAAATTTCCATGCTGAAATCCCTATAAATACCTCACACACCTTTTCCATCAAACACATCCCATTTCCAAT TGAATTAATTTGACATTGGAGAAGCAAAATAACCAAAAATGGGATTTTCCAAGGTTACACTTTCTCTAATAATGTGTGTC TTGTGCTTGGGACATTATGTTGTCTATGGCCAAGACTCACGTGCAGACTACCTCAATGCACACAACGCTGCAAGGTCAGC AGTGAATGTTCCAAATCTTGTTTGGGATGACACCGTAGCTGCTTTTGCACAGAACTATGCCAATCAACGTAAGGGAGACT GCAAACTGGTCCACTCAGGTGGTGGTGGACGTTACGGGGAGAACCTGGCGTGGGGAAAACCTGACCTAAGTGGCACAGGG GCAGTGAAATTGTGGGTGGATGAGAAAGCAAACTATGACTACAATTCTAATTCTTGTGCTAGTGGAAAACAGTGCGGGCA TTACACTCAGGTGGTTTGGAAAAACTCCATGCGCCTTGGATGTGCTAAGGTAAAATGTGATAATGGAGGAGGCACGTTTA TTACTTGCAACTATGACCCTCCAGGCAACTATGTTGGCCAAAAACCCTACTAAGTGAATAAGTGATCATCGATCCATTCT CTTGGGTCACTTAGCAGCTATCACCATACTAAGAATAAATAAATAAATGTCGCGGTATTAGTTTCGTGTTACATTATGTC GGAGACATTGCTTCATAGGCAGTGGCTATCTTATTAATAATTAATAAATGAAATTTCCAATTTATGACAATGTTTATGCC TGTGAGTTATCATGCTGTATCGTATTTTTTTTTAAAGTCACAAATATCCTGTATCTTCGTACAAGATATTTTTATTTGAG TTGAATAAAATAACCTCTGTGCTAGGATTGTACTTAATTTAATAAGTTAAATCTCGATGGTATTCCTTTCTTTTACTATT TTTTGATATTATAATTGAACAACTAGTATATATTAAAGCTTGTAATATATCTACTTTCCCA
CDS sequence (LotjaGi6g1v0345200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGATTTTCCAAGGTTACACTTTCTCTAATAATGTGTGTCTTGTGCTTGGGACATTATGTTGTCTATGGCCAAGACTC ACGTGCAGACTACCTCAATGCACACAACGCTGCAAGGTCAGCAGTGAATGTTCCAAATCTTGTTTGGGATGACACCGTAG CTGCTTTTGCACAGAACTATGCCAATCAACGTAAGGGAGACTGCAAACTGGTCCACTCAGGTGGTGGTGGACGTTACGGG GAGAACCTGGCGTGGGGAAAACCTGACCTAAGTGGCACAGGGGCAGTGAAATTGTGGGTGGATGAGAAAGCAAACTATGA CTACAATTCTAATTCTTGTGCTAGTGGAAAACAGTGCGGGCATTACACTCAGGTGGTTTGGAAAAACTCCATGCGCCTTG GATGTGCTAAGGTAAAATGTGATAATGGAGGAGGCACGTTTATTACTTGCAACTATGACCCTCCAGGCAACTATGTTGGC CAAAAACCCTACTAA
Protein sequence (LotjaGi6g1v0345200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGFSKVTLSLIMCVLCLGHYVVYGQDSRADYLNAHNAARSAVNVPNLVWDDTVAAFAQNYANQRKGDCKLVHSGGGGRYG ENLAWGKPDLSGTGAVKLWVDEKANYDYNSNSCASGKQCGHYTQVVWKNSMRLGCAKVKCDNGGGTFITCNYDPPGNYVG QKPY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 5 | 5 | - | – | |
| Phobius | 1 | 24 | 24 | - | – | |
| SignalP_EUK | 1 | 24 | 24 | - | – | |
| Phobius | 6 | 17 | 12 | - | – | |
| PANTHER | 12 | 164 | 153 | 2.0E-72 | – | |
| SUPERFAMILY | 12 | 164 | 153 | 1.83E-52 | ||
| PANTHER | 12 | 164 | 153 | 2.0E-72 | ||
| Phobius | 18 | 24 | 7 | - | – | |
| Phobius | 25 | 164 | 140 | - | – | |
| SMART | 26 | 160 | 135 | 4.4E-64 | ||
| Gene3D | 26 | 164 | 139 | 3.8E-48 | ||
| CDD | 29 | 164 | 136 | 4.05438E-87 | – | |
| Pfam | 32 | 152 | 121 | 3.7E-23 | ||
| PRINTS | 47 | 65 | 19 | 5.5E-22 | ||
| PRINTS | 47 | 65 | 19 | 1.1E-9 | ||
| PRINTS | 93 | 108 | 16 | 1.1E-9 | ||
| PRINTS | 95 | 108 | 14 | 5.5E-22 | ||
| PRINTS | 118 | 137 | 20 | 1.1E-9 | ||
| PRINTS | 119 | 135 | 17 | 5.5E-22 | ||
| ProSitePatterns | 120 | 130 | 11 | - | ||
| PRINTS | 147 | 160 | 14 | 5.5E-22 | ||
| ProSitePatterns | 147 | 158 | 12 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Extracellular region | The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. |
Expression pattern of LotjaGi6g1v0345200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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