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GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | SAGA complex | A SAGA-type histone acetyltransferase complex that contains Spt8 (in budding yeast) or a homolog thereof; additional polypeptides include Spt group, consisting of Spt7, Spt3, and Spt20/Ada5, which interact with the TATA-binding protein (TBP); the Ada group, consisting of Ada1, Ada2, Ada3, Ada4/Gcn5, and Ada5/Spt20, which is functionally linked to the nucleosomal HAT activity; Tra1, an ATM/PI-3 kinase-related protein that targets DNA-bound activators for recruitment to promoters; the TBP-associated factor (TAF) proteins, consisting of Taf5, Taf6, Taf9, Taf10, and Taf12, which mediate nucleosomal HAT activity and are thought to help recruit the basal transcription machinery; the ubiquitin specifc protease Ubp-8. | ||
| Cellular component | Transcription factor TFIID complex | A complex composed of TATA binding protein (TBP) and TBP associated factors (TAFs); the total mass is typically about 800 kDa. Most of the TAFs are conserved across species. In TATA-containing promoters for RNA polymerase II (Pol II), TFIID is believed to recognize at least two distinct elements, the TATA element and a downstream promoter element. TFIID is also involved in recognition of TATA-less Pol II promoters. Binding of TFIID to DNA is necessary but not sufficient for transcription initiation from most RNA polymerase II promoters. | ||
| Cellular component | SLIK (SAGA-like) complex | A SAGA-type histone acetyltransferase complex that contains Rtg2 and a smaller form of Spt7 than the fungal SAGA complex, and lacks Spt8. The complex is involved in the yeast retrograde response pathway, which is important for gene expression changes during mitochondrial dysfunction. |
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | PREDICTED: transcription initiation factor TFIID subunit 12-like isoform X1 [Cicer arietinum] gi|502178173|ref|XP_004516193.1| | 3 | ||
| – | Transcription initiation factor TFIID subunit [Medicago truncatula] gi|357513949|ref|XP_003627263.1| | 9 | ||
| – | Transcription initiation factor TFIID subunit [Medicago truncatula] gi|357513949|ref|XP_003627263.1| | 9 | ||
| – | Transcription initiation factor TFIID subunit 12; TAIR: AT1G17440.1 Transcription initiation factor TFIID subunit A; Swiss-Prot: sp|Q940A7|TA12B_ARATH Transcription initiation factor TFIID subunit 12b; TrEMBL-Plants: tr|V7ATA8|V7ATA8_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0415600 | 10 | ||
| – | Transcription initiation factor TFIID subunit 12; TAIR: AT3G10070.1 TBP-associated factor 12; Swiss-Prot: sp|Q9SR71|TAF12_ARATH Transcription initiation factor TFIID subunit 12; TrEMBL-Plants: tr|A0A151RJE5|A0A151RJE5_CAJCA Transcription initiation factor TFIID subunit 12; Found in the gene: LotjaGi5g1v0094200 | 10 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| mobidb-lite | MobiDBLite | 1 | 20.00 |