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Field | Value |
---|---|
Namespace | Cellular component |
Short description | SLIK (SAGA-like) complex |
Full defintion | A SAGA-type histone acetyltransferase complex that contains Rtg2 and a smaller form of Spt7 than the fungal SAGA complex, and lacks Spt8. The complex is involved in the yeast retrograde response pathway, which is important for gene expression changes during mitochondrial dysfunction. |
Subterm of |
The relationship of GO:0046695 with other GO terms.
Relationship type | GO terms |
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Is a | |
Regulates | n.a. |
Part of | n.a. |
Positively regulates | n.a. |
Negatively regulates | n.a. |
A force layout showing the ancestor tree for GO:0046695, and its immediate children. If you wish to explore the tree dynamically, please use the GO Explorer.
This table contains additional metadata associated with the GO entry's definition field.
Field | Value |
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PMID | Multi-tasking on chromatin with the SAGA coactivator complexes. Mutat Res. 2007 May 1; 618 (1-2): 135–48.PMID: 17337012 Over the past 10 years, much progress has been made to understand the roles of the similar, yet distinct yeast SAGA and SLIK coactivator complexes involved in histone post-translational modification and gene regulation. Many different groups have elucidated functions of the SAGA complexes including identification of novel components, which have conferred additional distinct functions. Together, recent studies demonstrate unique attributes of the SAGA coactivator complexes in histone acetylation, methylation, phosphorylation, and deubiquitination. In addition to roles in transcriptional activation with the 19S proteasome regulatory particle, recent evidence also suggests functions for SAGA in elongation and mRNA export. The modular nature of SAGA allows this approximately 1.8 MDa complex to organize its functions and carry out multiple roles during transcription, particularly under conditions of cellular stress. |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Transcript | Name | Description | GO terms | GO count |
---|---|---|---|---|
– | Transcription initiation factor TFIID subunit 6; TAIR: AT1G04950.1 TATA BOX ASSOCIATED FACTOR II 59; Swiss-Prot: sp|Q9MAU3|TAF6_ARATH Transcription initiation factor TFIID subunit 6; TrEMBL-Plants: tr|A0A0L9UX09|A0A0L9UX09_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0539400 | 5 | ||
– | Transcription initiation factor TFIID subunit 12; TAIR: AT1G17440.1 Transcription initiation factor TFIID subunit A; Swiss-Prot: sp|Q940A7|TA12B_ARATH Transcription initiation factor TFIID subunit 12b; TrEMBL-Plants: tr|V7ATA8|V7ATA8_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0415600 | 3 | ||
– | Transcription initiation factor TFIID subunit 12; TAIR: AT3G10070.1 TBP-associated factor 12; Swiss-Prot: sp|Q9SR71|TAF12_ARATH Transcription initiation factor TFIID subunit 12; TrEMBL-Plants: tr|A0A151RJE5|A0A151RJE5_CAJCA Transcription initiation factor TFIID subunit 12; Found in the gene: LotjaGi5g1v0094200 | 3 | ||
– | Transcription initiation factor TFIID subunit 6; TAIR: AT1G04950.1 TATA BOX ASSOCIATED FACTOR II 59; Swiss-Prot: sp|Q9MAU3|TAF6_ARATH Transcription initiation factor TFIID subunit 6; TrEMBL-Plants: tr|A0A151SBK3|A0A151SBK3_CAJCA Transcription initiation factor TFIID subunit 6; Found in the gene: LotjaGi6g1v0153200 | 5 | ||
– | Transcription initiation factor TFIID subunit 6; TAIR: AT1G04950.1 TATA BOX ASSOCIATED FACTOR II 59; Swiss-Prot: sp|Q9MAU3|TAF6_ARATH Transcription initiation factor TFIID subunit 6; TrEMBL-Plants: tr|A0A151SBK3|A0A151SBK3_CAJCA Transcription initiation factor TFIID subunit 6; Found in the gene: LotjaGi6g1v0153200 | 5 | ||
– | Transcription initiation factor TFIID subunit 6; TAIR: AT1G04950.1 TATA BOX ASSOCIATED FACTOR II 59; Swiss-Prot: sp|Q9MAU3|TAF6_ARATH Transcription initiation factor TFIID subunit 6; TrEMBL-Plants: tr|A0A151SBK3|A0A151SBK3_CAJCA Transcription initiation factor TFIID subunit 6; Found in the gene: LotjaGi6g1v0153200 | 5 | ||
– | Transcription initiation factor TFIID subunit 6; TAIR: AT1G04950.1 TATA BOX ASSOCIATED FACTOR II 59; Swiss-Prot: sp|Q9MAU3|TAF6_ARATH Transcription initiation factor TFIID subunit 6; TrEMBL-Plants: tr|A0A151SBK3|A0A151SBK3_CAJCA Transcription initiation factor TFIID subunit 6; Found in the gene: LotjaGi6g1v0153200 | 5 |
A list of co-occurring GO terms within the L. japonicus gene space:
GO term | Namespace | Name | Observations | Saturation (%) |
---|---|---|---|---|
Cellular component | SLIK (SAGA-like) complex | 1 | 14.29 |