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Transcript | Name | Description | Predicted domains | Domain count |
---|---|---|---|---|
– | Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G60650.1 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain-containing protein; Swiss-Prot: sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94; TrEMBL-Plants: tr|Q2HU05|Q2HU05_MEDTR Integrase, catalytic region; Zinc finger, CCHC-type; Peptidase aspartic, catalytic; Found in the gene: LotjaGi1g1v0148700_LC | 12 | ||
– | Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G48720.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|Q4H3K6|FGFR_CIOIN Fibroblast growth factor receptor; TrEMBL-Plants: tr|Q84VH6|Q84VH6_SOYBN Gag-pol polyprotein; Found in the gene: LotjaGi1g1v0197400_LC | 5 | ||
– | Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT4G00980.1 zinc knuckle (CCHC-type) family protein; Swiss-Prot: sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94; TrEMBL-Plants: tr|Q2HU05|Q2HU05_MEDTR Integrase, catalytic region; Zinc finger, CCHC-type; Peptidase aspartic, catalytic; Found in the gene: LotjaGi1g1v0226600 | 12 | ||
– | Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G48720.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94; TrEMBL-Plants: tr|A0A151TMN9|A0A151TMN9_CAJCA Retrovirus-related Pol polyprotein from transposon TNT 1-94; Found in the gene: LotjaGi1g1v0580500_LC | 6 | ||
– | Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT3G21000.1 Gag-Pol-related retrotransposon family protein; Swiss-Prot: sp|P33655|DNAG_CLOAB DNA primase; TrEMBL-Plants: tr|A0A151TWN6|A0A151TWN6_CAJCA Retrovirus-related Pol polyprotein from transposon TNT 1-94; Found in the gene: LotjaGi1g1v0615000_LC | 5 | ||
– | Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT5G66620.3 DA1-related protein 6; Swiss-Prot: sp|B8NP65|BGLF_ASPFN Probable beta-glucosidase F; TrEMBL-Plants: tr|Q2HU05|Q2HU05_MEDTR Integrase, catalytic region; Zinc finger, CCHC-type; Peptidase aspartic, catalytic; Found in the gene: LotjaGi1g1v0800100_LC | 4 | ||
– | Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G48720.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|Q9NUQ3|TXLNG_HUMAN Gamma-taxilin; TrEMBL-Plants: tr|A0A151R0I3|A0A151R0I3_CAJCA Retrovirus-related Pol polyprotein from transposon TNT 1-94; Found in the gene: LotjaGi2g1v0022400_LC | 5 | ||
– | Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G69910.1 Protein kinase superfamily protein; Swiss-Prot: sp|Q12158|SCC1_YEAST Sister chromatid cohesion protein 1; TrEMBL-Plants: tr|Q2HU05|Q2HU05_MEDTR Integrase, catalytic region; Zinc finger, CCHC-type; Peptidase aspartic, catalytic; Found in the gene: LotjaGi2g1v0062000_LC | 3 | ||
– | Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT3G21000.1 Gag-Pol-related retrotransposon family protein; Swiss-Prot: sp|B2RH57|FIMC_PORG3 Major fimbrium subunit FimC; TrEMBL-Plants: tr|A0A0S3SHM4|A0A0S3SHM4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0083500_LC | 6 | ||
– | Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT3G21000.1 Gag-Pol-related retrotransposon family protein; Swiss-Prot: sp|Q9KII6|CSD_MYCPA Probable cysteine desulfurase; TrEMBL-Plants: tr|V9H042|V9H042_SOYBN Gag-protease polyprotein; Found in the gene: LotjaGi2g1v0110100_LC | 5 | ||
– | Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT4G00980.1 zinc knuckle (CCHC-type) family protein; Swiss-Prot: sp|Q2GUW6|RPC3_CHAGB DNA-directed RNA polymerase III subunit RPC3; TrEMBL-Plants: tr|Q2HU05|Q2HU05_MEDTR Integrase, catalytic region; Zinc finger, CCHC-type; Peptidase aspartic, catalytic; Found in the gene: LotjaGi2g1v0127300_LC | 4 | ||
– | Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT4G00980.1 zinc knuckle (CCHC-type) family protein; Swiss-Prot: sp|Q2GUW6|RPC3_CHAGB DNA-directed RNA polymerase III subunit RPC3; TrEMBL-Plants: tr|Q2HU05|Q2HU05_MEDTR Integrase, catalytic region; Zinc finger, CCHC-type; Peptidase aspartic, catalytic; Found in the gene: LotjaGi2g1v0127300_LC | 4 | ||
– | Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT4G00980.1 zinc knuckle (CCHC-type) family protein; Swiss-Prot: sp|P16654|VSR_PVSP RNA silencing suppressor; TrEMBL-Plants: tr|Q2HU05|Q2HU05_MEDTR Integrase, catalytic region; Zinc finger, CCHC-type; Peptidase aspartic, catalytic; Found in the gene: LotjaGi2g1v0141900_LC | 4 | ||
– | Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT3G21000.1 Gag-Pol-related retrotransposon family protein; Swiss-Prot: sp|P04146|COPIA_DROME Copia protein; TrEMBL-Plants: tr|A0A151RFC2|A0A151RFC2_CAJCA Retrovirus-related Pol polyprotein from transposon TNT 1-94; Found in the gene: LotjaGi2g1v0164700_LC | 7 | ||
– | Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G69910.1 Protein kinase superfamily protein; Swiss-Prot: sp|O94628|YGE9_SCHPO Uncharacterized methyltransferase C1347.09; TrEMBL-Plants: tr|Q2HU05|Q2HU05_MEDTR Integrase, catalytic region; Zinc finger, CCHC-type; Peptidase aspartic, catalytic; Found in the gene: LotjaGi2g1v0216300_LC | 6 | ||
– | Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT4G00980.1 zinc knuckle (CCHC-type) family protein; Swiss-Prot: sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94; TrEMBL-Plants: tr|A0A151U3K9|A0A151U3K9_CAJCA Retrovirus-related Pol polyprotein from transposon TNT 1-94; Found in the gene: LotjaGi3g1v0044100_LC | 4 | ||
– | Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G16280.1 RNA helicase 36; Swiss-Prot: sp|B3R895|RPPH_CUPTR RNA pyrophosphohydrolase; TrEMBL-Plants: tr|Q2HU05|Q2HU05_MEDTR Integrase, catalytic region; Zinc finger, CCHC-type; Peptidase aspartic, catalytic; Found in the gene: LotjaGi3g1v0270200_LC | 5 | ||
– | Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT4G00980.1 zinc knuckle (CCHC-type) family protein; Swiss-Prot: sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94; TrEMBL-Plants: tr|Q2HU05|Q2HU05_MEDTR Integrase, catalytic region; Zinc finger, CCHC-type; Peptidase aspartic, catalytic; Found in the gene: LotjaGi3g1v0297700_LC | 12 | ||
– | Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT5G66620.2 DA1-related protein 6; Swiss-Prot: sp|Q72PF1|PDXH_LEPIC Pyridoxine/pyridoxamine 5'-phosphate oxidase; TrEMBL-Plants: tr|Q2HU05|Q2HU05_MEDTR Integrase, catalytic region; Zinc finger, CCHC-type; Peptidase aspartic, catalytic; Found in the gene: LotjaGi3g1v0301600_LC | 4 | ||
– | Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT3G21000.1 Gag-Pol-related retrotransposon family protein; Swiss-Prot: sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94; TrEMBL-Plants: tr|A0A151R0I3|A0A151R0I3_CAJCA Retrovirus-related Pol polyprotein from transposon TNT 1-94; Found in the gene: LotjaGi3g1v0523400_LC | 7 | ||
– | Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G60650.3 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain-containing protein; Swiss-Prot: sp|P34689|GLH1_CAEEL ATP-dependent RNA helicase glh-1; TrEMBL-Plants: tr|Q2HU05|Q2HU05_MEDTR Integrase, catalytic region; Zinc finger, CCHC-type; Peptidase aspartic, catalytic; Found in the gene: LotjaGi4g1v0177800 | 11 | ||
– | Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G48720.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|Q9L9F9|NOVI_STRNV Cytochrome P450 NovI; TrEMBL-Plants: tr|Q84VH6|Q84VH6_SOYBN Gag-pol polyprotein; Found in the gene: LotjaGi4g1v0183900_LC | 4 | ||
– | Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G48720.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|Q9L9F9|NOVI_STRNV Cytochrome P450 NovI; TrEMBL-Plants: tr|Q84VH6|Q84VH6_SOYBN Gag-pol polyprotein; Found in the gene: LotjaGi4g1v0183900_LC | 4 | ||
– | Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT4G00980.1 zinc knuckle (CCHC-type) family protein; Swiss-Prot: sp|A5E058|PRP5_LODEL Pre-mRNA-processing ATP-dependent RNA helicase PRP5; TrEMBL-Plants: tr|Q2HU05|Q2HU05_MEDTR Integrase, catalytic region; Zinc finger, CCHC-type; Peptidase aspartic, catalytic; Found in the gene: LotjaGi4g1v0206500_LC | 4 | ||
– | Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT4G00980.1 zinc knuckle (CCHC-type) family protein; Swiss-Prot: sp|P34689|GLH1_CAEEL ATP-dependent RNA helicase glh-1; TrEMBL-Plants: tr|Q2HU05|Q2HU05_MEDTR Integrase, catalytic region; Zinc finger, CCHC-type; Peptidase aspartic, catalytic; Found in the gene: LotjaGi5g1v0009800 | 8 | ||
– | Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT3G21000.1 Gag-Pol-related retrotransposon family protein; Swiss-Prot: sp|O51578|RECB_BORBU RecBCD enzyme subunit RecB; TrEMBL-Plants: tr|O65147|O65147_SOYBN Gag-pol polyprotein; Found in the gene: LotjaGi5g1v0100900_LC | 4 | ||
– | Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT3G04480.1 endoribonuclease; Swiss-Prot: sp|A2SD39|RPPH_METPP RNA pyrophosphohydrolase; TrEMBL-Plants: tr|Q2HU05|Q2HU05_MEDTR Integrase, catalytic region; Zinc finger, CCHC-type; Peptidase aspartic, catalytic; Found in the gene: LotjaGi5g1v0101100_LC | 5 | ||
– | Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G48720.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|Q8A861|AEEP_BACTN L-Ala-D/L-Glu epimerase; TrEMBL-Plants: tr|Q84VH6|Q84VH6_SOYBN Gag-pol polyprotein; Found in the gene: LotjaGi5g1v0121000_LC | 4 | ||
– | Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT2G06904.1 nucleic acid / zinc ion binding protein; Swiss-Prot: sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94; TrEMBL-Plants: tr|Q2HU05|Q2HU05_MEDTR Integrase, catalytic region; Zinc finger, CCHC-type; Peptidase aspartic, catalytic; Found in the gene: LotjaGi5g1v0125400 | 12 | ||
– | Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G48720.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94; TrEMBL-Plants: tr|A0A151TMN9|A0A151TMN9_CAJCA Retrovirus-related Pol polyprotein from transposon TNT 1-94; Found in the gene: LotjaGi5g1v0334300_LC | 14 | ||
– | Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G34070.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|Q17LW0|MYO7A_AEDAE Myosin-VIIa; TrEMBL-Plants: tr|A0A1J3EAM3|A0A1J3EAM3_NOCCA Retrovirus-related Pol polyprotein from transposon TNT 1-94; Found in the gene: LotjaGi5g1v0349300 | 4 | ||
– | Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT4G00980.1 zinc knuckle (CCHC-type) family protein; Swiss-Prot: sp|Q5R9C2|S6A15_PONAB Sodium-dependent neutral amino acid transporter B(0)AT2; TrEMBL-Plants: tr|Q2HU05|Q2HU05_MEDTR Integrase, catalytic region; Zinc finger, CCHC-type; Peptidase aspartic, catalytic; Found in the gene: LotjaGi6g1v0111800_LC | 4 | ||
– | Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G48720.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|Q9UTE1|YFMD_SCHPO Probable 6-phosphofructo-2-kinase C222.13c; TrEMBL-Plants: tr|A0A151TMN9|A0A151TMN9_CAJCA Retrovirus-related Pol polyprotein from transposon TNT 1-94; Found in the gene: LotjaGi6g1v0149400 | 3 | ||
– | Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G48720.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|F3Y5P4|GRDN_CAEEL Girdin homolog; TrEMBL-Plants: tr|A0A0B2QRG5|A0A0B2QRG5_GLYSO Uncharacterized protein; Found in the gene: LotjaGi6g1v0171900_LC | 5 |
A list of co-occurring predicted domains within the L. japonicus gene space:
Predicted domain | Source | Observations | Saturation (%) |
---|---|---|---|
PTHR34676:SF4 | PANTHER | 1 | 2.94 |