Domain Predictions — View

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IPR025314

Source: InterPro

Description

IPR025314 is a Domain of unknown function DUF4219.

<p>This domain is very short and is found at the N-terminal of many Gag-pol polyproteins from retrotransposons and related sequences. There is a highly conserved YxxWxxxM sequence motif.</p>

This description is obtained from EB-eye REST.

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 21

Transcript	Name	Description	Predicted domains	Domain count
Lj0g3v0018569.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Gag-pol polyprotein [Glycine max] gi\|29423282\|gb\|AAO73529.1\|	Domains IPR025314 PF13961	2
Lj0g3v0043939.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Gag-protease polyprotein [Glycine max] gi\|351721388\|ref\|NP_001235160.1\|	Domains IPR025314 PF13961 PF14223 PTHR11439	4
Lj0g3v0189599.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Gag-protease polyprotein [Glycine max] gi\|351721388\|ref\|NP_001235160.1\|	Domains IPR025314 PF13961 PF14223 PTHR11439	4
Lj0g3v0219169.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2-like [Glycine max] gi\|356506547\|ref\|XP_003522041.1\|	Domains IPR025314 PF13961	2
Lj1g3v1219100.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	T26F17.17 [Arabidopsis thaliana] gi\|6552735\|gb\|AAF16534.1\|AC013482_8	Domains IPR025314 PF13961	2
Lj1g3v2923000.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Disease resistance protein [Medicago truncatula] gi\|357509661\|ref\|XP_003625119.1\|	Domains IPR025314 PF13961	2
LotjaGi1g1v0501200_LC.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT3G21000.1 Gag-Pol-related retrotransposon family protein; Swiss-Prot: sp\|Q67373\|HEMA_INBHL Hemagglutinin; TrEMBL-Plants: tr\|A0A151UAW8\|A0A151UAW8_CAJCA Retrovirus-related Pol polyprotein from transposon TNT 1-94; Found in the gene: LotjaGi1g1v0501200_LC	Domains IPR025314 PF13961 PF14223 PTHR35317 PTHR35317:SF6	5
LotjaGi1g1v0501200_LC.5 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT3G21000.1 Gag-Pol-related retrotransposon family protein; Swiss-Prot: sp\|Q67373\|HEMA_INBHL Hemagglutinin; TrEMBL-Plants: tr\|A0A151UAW8\|A0A151UAW8_CAJCA Retrovirus-related Pol polyprotein from transposon TNT 1-94; Found in the gene: LotjaGi1g1v0501200_LC	Domains IPR025314 PF13961 PF14223 PTHR35317 PTHR35317:SF6	5
LotjaGi1g1v0615000_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT3G21000.1 Gag-Pol-related retrotransposon family protein; Swiss-Prot: sp\|P33655\|DNAG_CLOAB DNA primase; TrEMBL-Plants: tr\|A0A151TWN6\|A0A151TWN6_CAJCA Retrovirus-related Pol polyprotein from transposon TNT 1-94; Found in the gene: LotjaGi1g1v0615000_LC	Domains IPR025314 PF13961 PF14223 PTHR34676 PTHR34676:SF4	5
LotjaGi1g1v0625900_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT3G21000.1 Gag-Pol-related retrotransposon family protein; Swiss-Prot: sp\|Q1MP86\|CHEB_LAWIP Chemotaxis response regulator protein-glutamate methylesterase; TrEMBL-Plants: tr\|A0A151R0Z6\|A0A151R0Z6_CAJCA Retrovirus-related Pol polyprotein from transposon TNT 1-94; Found in the gene: LotjaGi1g1v0625900_LC	Domains IPR025314 PF13961 PF14223 PTHR35317 PTHR35317:SF6	5
LotjaGi1g1v0688500.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT4G23160.2 cysteine-rich RECEPTOR-like kinase; Swiss-Prot: sp\|P10978\|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94; TrEMBL-Plants: tr\|A0A151QUV8\|A0A151QUV8_CAJCA Retrovirus-related Pol polyprotein from transposon TNT 1-94; Found in the gene: LotjaGi1g1v0688500	Domains G3DSA:3.30.420.10 IPR001584 IPR001878 IPR012337 IPR013103 IPR025314 IPR025724 IPR036397 IPR036875 IPR043502 PF00665 PF07727 PF13961 PF13976 PF14223 PS50158 PS50994 PTHR11439 PTHR11439:SF250 SSF53098 SSF56672 SSF57756 cd09272 mobidb-lite	24
LotjaGi1g1v0754200_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G48720.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp\|Q60841\|RELN_MOUSE Reelin; TrEMBL-Plants: tr\|M1A8F6\|M1A8F6_SOLTU Uncharacterized protein; Found in the gene: LotjaGi1g1v0754200_LC	Domains IPR025314 PF13961 PTHR35317 PTHR35317:SF6	4
LotjaGi2g1v0076500.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT4G23160.2 cysteine-rich RECEPTOR-like kinase; Swiss-Prot: sp\|P10978\|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94; TrEMBL-Plants: tr\|A0A151R7U0\|A0A151R7U0_CAJCA Retrovirus-related Pol polyprotein from transposon TNT 1-94; Found in the gene: LotjaGi2g1v0076500	Domains Coil G3DSA:3.30.420.10 G3DSA:4.10.60.10 IPR001584 IPR012337 IPR013103 IPR025314 IPR025724 IPR036397 IPR036875 IPR043502 PF00665 PF07727 PF13961 PF13976 PF14223 PS50994 PTHR11439 PTHR11439:SF264 SSF53098 SSF56672 SSF57756 cd09272 mobidb-lite	24
LotjaGi2g1v0338000.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Ankyrin repeat-containing protein family; TAIR: AT3G18670.1 Ankyrin repeat family protein; Swiss-Prot: sp\|Q8Q0U0\|Y045_METMA Putative ankyrin repeat protein MM_0045; TrEMBL-Plants: tr\|A0A151THD2\|A0A151THD2_CAJCA Ankyrin repeat-containing protein family; Found in the gene: LotjaGi2g1v0338000	Domains G3DSA:1.25.40.20 IPR002110 IPR020683 IPR025314 IPR036770 PF12796 PF13961 PS50088 PS50297 PTHR24177 PTHR24177:SF228 SM00248 SSF48403	13
LotjaGi2g1v0338000.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Ankyrin repeat-containing protein family; TAIR: AT3G18670.1 Ankyrin repeat family protein; Swiss-Prot: sp\|Q8Q0U0\|Y045_METMA Putative ankyrin repeat protein MM_0045; TrEMBL-Plants: tr\|A0A151THD2\|A0A151THD2_CAJCA Ankyrin repeat-containing protein family; Found in the gene: LotjaGi2g1v0338000	Domains G3DSA:1.25.40.20 IPR002110 IPR020683 IPR025314 IPR036770 PF12796 PF13961 PS50088 PS50297 PTHR24177 PTHR24177:SF228 SM00248 SSF48403	13
LotjaGi3g1v0051400_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT3G20980.1 Gag-Pol-related retrotransposon family protein; Swiss-Prot: sp\|P04146\|COPIA_DROME Copia protein; TrEMBL-Plants: tr\|A0A151SFK6\|A0A151SFK6_CAJCA Retrovirus-related Pol polyprotein from transposon TNT 1-94; Found in the gene: LotjaGi3g1v0051400_LC	Domains Coil IPR025314 IPR036875 PF13961 PF14223 PTHR35317 PTHR35317:SF6 SSF57756 mobidb-lite	9
LotjaGi3g1v0311200_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G48720.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp\|Q9WRL5\|GB_TUHV2 Envelope glycoprotein B; TrEMBL-Plants: tr\|U7E0I4\|U7E0I4_POPTR Uncharacterized protein; Found in the gene: LotjaGi3g1v0311200_LC	Domains CYTOPLASMIC_DOMAIN IPR025314 NON_CYTOPLASMIC_DOMAIN PF13961 PTHR35317 PTHR35317:SF6 TRANSMEMBRANE	7
LotjaGi3g1v0311200_LC.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G48720.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp\|Q9WRL5\|GB_TUHV2 Envelope glycoprotein B; TrEMBL-Plants: tr\|U7E0I4\|U7E0I4_POPTR Uncharacterized protein; Found in the gene: LotjaGi3g1v0311200_LC	Domains CYTOPLASMIC_DOMAIN IPR025314 NON_CYTOPLASMIC_DOMAIN PF13961 PTHR35317 PTHR35317:SF6 TRANSMEMBRANE	7
LotjaGi5g1v0334300_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G48720.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp\|P10978\|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94; TrEMBL-Plants: tr\|A0A151TMN9\|A0A151TMN9_CAJCA Retrovirus-related Pol polyprotein from transposon TNT 1-94; Found in the gene: LotjaGi5g1v0334300_LC	Domains Coil G3DSA:4.10.60.10 IPR001878 IPR025314 IPR036875 PF00098 PF13961 PF14223 PS50158 PTHR34676 PTHR34676:SF4 SM00343 SSF57756 mobidb-lite	14
LotjaGi6g1v0171900_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G48720.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp\|F3Y5P4\|GRDN_CAEEL Girdin homolog; TrEMBL-Plants: tr\|A0A0B2QRG5\|A0A0B2QRG5_GLYSO Uncharacterized protein; Found in the gene: LotjaGi6g1v0171900_LC	Domains IPR025314 PF13961 PF14223 PTHR34676 PTHR34676:SF4	5
LotjaGi6g1v0319400_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT3G21000.1 Gag-Pol-related retrotransposon family protein; Swiss-Prot: sp\|Q28CN3\|UBP33_XENTR Ubiquitin carboxyl-terminal hydrolase 33; TrEMBL-Plants: tr\|A0A151UAW8\|A0A151UAW8_CAJCA Retrovirus-related Pol polyprotein from transposon TNT 1-94; Found in the gene: LotjaGi6g1v0319400_LC	Domains Coil IPR025314 PF13961 PF14223 PTHR35317 PTHR35317:SF6	6

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
PTHR35317:SF6	PANTHER	1	4.76