Domain Predictions — View

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SM01066

Source: SMART

Description

No description is available for this domain.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:2001070 View details of GO:2001070 AmiGO InterPro QuickGO	Molecular function	Starch binding	Interacting selectively and non-covalently with starch.	Subterm of GO:0030247

Associated Lotus transcripts 8

Transcript	Name	Description	Predicted domains	Domain count
Lj0g3v0048129.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Starch synthase III [Phaseolus vulgaris] gi\|133253467\|dbj\|BAF49176.1\|	Domains Coil IPR005085 PF16760 PTHR12526 PTHR12526:SF341 SM01066 mobidb-lite	7
Lj4g3v0151580.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: soluble starch synthase 3, chloroplastic/amyloplastic-like [Cicer arietinum] gi\|502079126\|ref\|XP_004486163.1\|	Domains Coil IPR005085 PF16760 PTHR12526 PTHR12526:SF388 SM01066 mobidb-lite	7
Lj6g3v1874670.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Starch synthase III [Phaseolus vulgaris] gi\|133253467\|dbj\|BAF49176.1\|	Domains Coil G3DSA:3.40.50.2000 IPR005085 IPR011835 IPR013534 MF_00484 PF08323 PF16760 PTHR12526 PTHR12526:SF341 SM01066 SSF53756 cd03791 mobidb-lite	14
LotjaGi1g1v0526600_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Soluble starch synthase; TAIR: AT1G11720.2 starch synthase 3; Swiss-Prot: sp\|Q43846\|SSY3_SOLTU Soluble starch synthase 3, chloroplastic/amyloplastic; TrEMBL-Plants: tr\|A4F2M4\|A4F2M4_PHAVU Starch synthase III; Found in the gene: LotjaGi1g1v0526600_LC	Domains Coil G3DSA:2.60.40.10 IPR005085 IPR013783 PF16760 PTHR46083 PTHR46083:SF5 SM01066 mobidb-lite	9
LotjaGi1g1v0526600_LC.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Soluble starch synthase; TAIR: AT1G11720.2 starch synthase 3; Swiss-Prot: sp\|Q43846\|SSY3_SOLTU Soluble starch synthase 3, chloroplastic/amyloplastic; TrEMBL-Plants: tr\|A4F2M4\|A4F2M4_PHAVU Starch synthase III; Found in the gene: LotjaGi1g1v0526600_LC	Domains Coil G3DSA:2.60.40.10 IPR005085 IPR013783 PF16760 PTHR46083 PTHR46083:SF5 SM01066 mobidb-lite	9
LotjaGi1g1v0526600_LC.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Soluble starch synthase; TAIR: AT1G11720.2 starch synthase 3; Swiss-Prot: sp\|Q43846\|SSY3_SOLTU Soluble starch synthase 3, chloroplastic/amyloplastic; TrEMBL-Plants: tr\|A4F2M4\|A4F2M4_PHAVU Starch synthase III; Found in the gene: LotjaGi1g1v0526600_LC	Domains Coil G3DSA:2.60.40.10 IPR005085 IPR013783 PF16760 PTHR46083 PTHR46083:SF5 SM01066 mobidb-lite	9
LotjaGi4g1v0014500.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Starch synthase family protein; TAIR: AT1G11720.2 starch synthase 3; Swiss-Prot: sp\|Q43846\|SSY3_SOLTU Soluble starch synthase 3, chloroplastic/amyloplastic; TrEMBL-Plants: tr\|A4F2M4\|A4F2M4_PHAVU Starch synthase III; Found in the gene: LotjaGi4g1v0014500	Domains Coil G3DSA:2.60.40.10 G3DSA:3.40.50.2000 IPR001296 IPR005085 IPR011835 IPR013534 IPR013783 MF_00484 PF00534 PF08323 PF16760 PTHR46083 PTHR46083:SF5 SM01066 SSF53756 cd03791 mobidb-lite	18
LotjaGi6g1v0294600.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Starch synthase family protein; TAIR: AT1G11720.2 starch synthase 3; Swiss-Prot: sp\|Q43846\|SSY3_SOLTU Soluble starch synthase 3, chloroplastic/amyloplastic; TrEMBL-Plants: tr\|A4F2M4\|A4F2M4_PHAVU Starch synthase III; Found in the gene: LotjaGi6g1v0294600	Domains Coil G3DSA:2.60.40.10 G3DSA:3.40.50.2000 IPR001296 IPR005085 IPR011835 IPR013534 IPR013783 MF_00484 PF00534 PF08323 PF16760 PTHR46083 PTHR46083:SF5 SM01066 SSF53756 cd03791 mobidb-lite	18

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	12.50