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| Field | Value |
|---|---|
| Gene ID | Lj6g3v1874670 |
| Transcript ID | Lj6g3v1874670.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | starch synthase III [Phaseolus vulgaris] gi|133253467|dbj|BAF49176.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 66 | 128 | 63 | – | – | |
| MobiDBLite | 188 | 208 | 21 | – | – | |
| Coils | 217 | 237 | 21 | – | – | |
| SMART | 253 | 338 | 86 | 9.50E-26 | ||
| Pfam | 257 | 337 | 81 | 1.10E-16 | ||
| PANTHER | 261 | 630 | 370 | 0 | – | |
| PANTHER | 261 | 630 | 370 | 0 | – | |
| Coils | 351 | 400 | 50 | – | – | |
| MobiDBLite | 366 | 391 | 26 | – | – | |
| SMART | 428 | 519 | 92 | 2.90E-19 | ||
| Pfam | 431 | 517 | 87 | 1.70E-15 | ||
| SMART | 590 | 679 | 90 | 2.70E-20 | ||
| Pfam | 593 | 678 | 86 | 2.30E-14 | ||
| PANTHER | 685 | 1136 | 452 | 0 | – | |
| PANTHER | 685 | 1136 | 452 | 0 | – | |
| SUPERFAMILY | 688 | 1136 | 449 | 1.18E-95 | – | |
| Hamap | 688 | 1134 | 447 | 33.351 | ||
| CDD | 689 | 1132 | 444 | 0 | – | |
| Pfam | 689 | 878 | 190 | 2.60E-50 | ||
| Gene3D | 898 | 1116 | 219 | 2.30E-72 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Glycogen (starch) synthase activity | Catalysis of the reaction: UDP-glucose + (1,4)-alpha-D-glucosyl(n) = UDP + (1,4)-alpha-D-glucosyl(n+1). | ||
| Molecular function | Starch binding | Interacting selectively and non-covalently with starch. |
Expression pattern of Lj6g3v1874670.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v1874670.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.