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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0398000 |
| Transcript ID | LotjaGi1g1v0398000.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myosin heavy chain-like protein; TAIR: AT4G31340.1 myosin heavy chain-like protein; Swiss-Prot: sp|P07942|LAMB1_HUMAN Laminin subunit beta-1; TrEMBL-Plants: tr|I3T954|I3T954_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0398000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:88455728..88462818) extracted from Lotus japonicus Gifu genome v1.2.
CTTGCCACATGTTTACATGAGCTTTCACTTGAGATTTGATTCTCTCTTGCATGGAGACGAGGCTGCCTCAGAATAACACC TCGTGGGTTTTCTTTATTTATTTTTGTTTGAAATCTGAAAATTTAATAAAATAAATAAAAAAATAAAAAAATCTCCATTG TTACCCTTATTCTTCTTCTTCTTTTTCTTCTTCTTCTTCTTCTCCTTTATTATACAGCGATGCGATGGCGTTACTATTAA TATAGAAAATTGCAGGTAGCGTGTTGCTGTATCTTCCTCTCCCAAGCTTTGTTGGCGGCAAAGCAAATTCTCCATTGCAA TGGCGCCTCCGAAGCTCTTCCTATTCACGCTTTCCCTAGCCCTAATTTTCTCCATCTCCGCCGCCGACGCCGGTGTTTCC CACGACGATTCCGTCAAGATCCAATTAGATCAACTCAATTCCAGGATCCTAACTCTCGGTTCGTTCCCTTAGCAAAAACC TAACTGTTTTCGATTGCTTCGATTTCAATTTCAGTACTATAACACTGTTCCTGTTCGTTTGAAACAATCGATTTCACCGT GCTGTAAATCATTCAATTGTTTTCAATTACTGAGGAAATAATTGTTGGGTTTTGAAAATCAACTTCTGGGGTTTACGAGT GTTCATGTTCATGCTTGATCTGTATACAAAGTCACCTTTTTGCATGGTGGATAATGAATGATTTACAAATTGTCAATTTT TTAATTTTTCTGCTGGAAATTTGGTATTTTTTGATTTATTTTTATGGCTGAATTATGCCCTGTGCTTGATTTTGGTGTGT AGAATCTCAAATCAAGGACAAGTCTCAAGAGCTGAAGAAGAAGGATGAAGTAATAGCAGAAAAAGAGAAATTCATTCAAG ATAAATCGAGTACCGTTGAATCCTTGCAGAATGAGGTTGCTTCTCTACAGGTGAGTGACAAGGGGTTAGACCTTGCAGGC AAAATTTCCTTGTTATGTTATTGGTTTTCACTTTTTTTTGTTCTCAGTTGAAAATATTGGTTATTGTATTTCCTACTAAG TACAATGCAAGTAGGGCAGTAAATGTTATTTTCATATTTCTGTTGTTCTTGGAGCGTTTTGAAACACTATAGAGTTGGAA TTTGGAAAAAGAATCCCATACTCAGTGTCATTTGTTAGTTATTCTAATTTGTATAAAAACACTCTTTAAATTTAATTTGT TTTTCATCAGAAAAAAGGGTCATTGGATGCTCAGGAGGAGGTGGGAAAGGCTCATGCACGTGCTGGTGAACTTCAGAAGC AGGTTATACATGAATAACCTAGTGGGTGTATTATGCAAATGATCATGAATTTTCCGAGCATGCTCTGAAATCCTTTTTGC AGGTGGAGAATCTTAAAAGGGAACTTGAAAAACAAAACAAAGAGAAAGTAAACTGGGAAACTCGGGTAGCTGAGTTGGAG AAGAAGATTCATGATTTGAACTCAAAACTAGAGGATGTAAGCTCTACATTTGGCTAGTTTGTTCAAATACTGCTTTAGTT ATATCCTTAGTTTGTTGTCTTTTGAACTAATTCTTATATATAATGTAATAATGTATATACTGTTTGCGAAATATAATTTA TAGATGTTATTGTTCTTGTTGAAGTTGAAGTATATTAACTCACTCTTTCGAAAAATACAATTGCTGGGTTATATTATTGG TCATGGATTTTCTGAGTTGTGGAGGGGGGTCCAGCTCTCAAGTCATTATTGGTTTCTTTCGCCGTTGCTGCATTATAATA TGGTTTGGTGCTTGAACATATTTTTTACTATGAACATTGGAACTGCATTTTAGGTGAATTATCAACATATAATGTTGGGA TATGAAAAAATACTTCTTCCATGGATATACGTTTGTTGTATCCTTCTCTAGGTCATGGAATCTAAAAGTTATCTGAACCC GGTACCTCTGGCATTTGTTCATTGGTGCATATCGTAGATTTACTATTAGTTTCTCTGATTGTGGGATGTTTTTGGATTTT TCAAGGCTTGAGGTGCCACCCTCTTCTAGTGTGTATTACGACCGCATTATTGTAGGGGTTATTATCATATTAGTAGCTAT TGCTGTTTGTTTTAGGATGACCCACTGTTATTTTAGATCGTGTAGAAAGAAAATATATTATTGCACCTATTGAGGCCAAC TACTTACAAAAATAAAATAAAATAAAAATCAAGGCGTTATTATTTTTTTCTCAAAATTAAACCTACAATCATGTCTAATA TCAATTTAAATTTCTGATTATCAAAATATAATGTCTTTGAAGATGATATGGTGACTTTAGTAGTGCATTCTCTGCAGATT CAAAAGGTAAATGAGGAACAGAAGACAAAAATTCGTAAAACTGAGCGTGCTCTTAAAGTTGCTGAGGTACGTAAATGCAT AGGTTTTCTTGTCTATGTAGTGCATGTTGCTTGGTGATGGTTTTGATGAAAGTGTCTTGTTTTACCACTAATAATTGACT TTTTAGGAAGAAATGGTGAAGGCAAAGCTAGAGGCAAATTCCAAAGCCAGGGAGCTGATAGAGGTAATAATTCTGCTTAC TACCTAAACCTTTTCTTTCCAACGTGTATGAATTGTGAGAGCCAGTTTTAAACCTCCAAAGTATCTGGGTTAATCACAAT GGCTATCAAGAGCTGAGGAATTCTTCCTGCTTTTTTTATGGAGATAAATGAAGGAAACCTTGCATGAGTGTGAAATGTTC ACTAGTAGCTGAAGTGTTAGGGTTGTTTTAAGAAATCTCAACATCATGATAGTAAATATAGGAAAATAAATCATCACAGA TAGCTTTGGATGGTCGATGCTTAGTTTGGTTTTAGGCCCAGTCTGTGATAAATTAAAGAACTGTCTATGGGAAATGTTCT AAAAAGTTGTTTTCATTGAAAGAAGAAAATCATAGTTATTTACATACTCTATGAATTATCATTTTAAAAATCATACATGT ACATATAAATATTGATGTAGAAAATTCTTAAATATAAGTACTAAGTAACCCAATAGTGATTGGTCGCATTCTTACAACTA CGCCTTTCAAAGACACAAACAGATTGGCCTGCCCCATGACTAACCTGCCAAATAACGGGCAGGTTGACCTATTGTAAGTC TGAATCAAGGTATTATGTGGTGGATATATGAGATATACACTTTGGTTTCATAAACAACAGCTGCCTATTGCTACATTACT AGTGAGAATTTCAAAAAATATTCCATTTTCTTGTGAAATTTTGATTATCTTAATAGTTATGATGATGTGCATTTAATTGA TGCACATTTATGTTAATGATCAGGCTCATGGTAATTGGCTTCCTCCTTGGCTTGCTGTACACTATATTCGCAGTAAGGTG TGTTCATGTTATATACCCTATATTTGTTTGAACAATCTTGTTCACAAGTTCTAAGAATTTTACTTTTTATTAGTCCTTGG TTGAGGCTCATTGGAATAAACATGGGAAACCTGTGCTGGAAGTGGTTACTCAGAAGGTACCATGATGGTTTTTATTTGCC TTTCAATCTTTCTATTCAATTTCTTTTTCTGACACTTTAATCAAATTATGAATCCCAGGTTTAGTATTTTTTTCCACCAT CACTTCAAGGAAATCTATTGACTTATGTATTTTATAAGACTTAGAGAAGAAAATAAATAAAACCCACTACTAATGAATGT CACAGACCAGAGCTTCTAGTTATCAATACAATTTTCTGAATTTTCAAGAAAAAAAATAGAAAATATTCCAAAGGTTTCTG AGCAAAGGACCCAAGCCAAAAGACTGAATGCTGCTGCCAAAATTCTTTCTTTTCTCACCTTTCCCATATGTCCCTCTTAA TAACCACCCTTTTAGAAATCCTCTTACCCCTTCTTGCATAACTACCTGCTACTCCACACCTCCCTCAACACGTGTCCCTA CTCCCCCCCCCCCTCTCCCCCAAGAATAAACATTCCGAATACATGGCCCCTAAGTCAACTGACCAGTATCTTGGCCCATT TTTTTCACATTACCACCTAAATCTCTATCATATTTTAATGTCTTTCATATTTATTCTAGGCCCTGGAGAAAAAGGCACAA GCTGAAAAGTGGGCTGAACCTCATCTGGAAACAGTTAAAACTGTAAGCCCTTCATTCACATCTTTCAGATTTTTTTATAT GTAATTCTGTATCCATTTATGAGTTTCCTCACTTGTCAAAGATTTGTTGAATACCTTGGAGAATTTAAATATATTCTCTT TCTTGATTTCAATTGAAGAAATGGATCCCAGCTGTAAAACAACAGTGGTCTGAGGTGAAAACACAAGCTGAACCTCGTGT GCAATTATTGAGAACTAAATCTTTTGAAGTTTATGAGACATCAAAGAAGGCAATTGATCCCCACTTTAGCAATGCAAAAG AGTTTGTAGATCCTTATTATCAGGTATAAGTTGTTTAATCCTTATGATGTGTTTGTGTTTGCTTTGCTTATATGATTCTT AAGGTATTATCAACTGGCTAACAGGAAGCAAGAAAGTTAAGCAAGCCATACATTGATCAGGTTGCTGTCGCAGCCAAACC TCATGTTGATAAAGCACAAGTGGTTCTAAAGCCCTACACAAAGAAAGTCGTTCATGCTTATAGAAATTTCTTACAATCGG CCACTACTTATCATCGCCAGGTGTCATGCTTCATCTGTTTATATCATAGTGAAAAATTTCATGCAAACCCTTTTGTTCTT ATCACTATTCAATTCTGATATCAACACCTGTATTGTATTTTACATGCTGTACCTGTTTCATGCTATATCTGCATACCGGC TAATTGAAAATAGAAACTGTAGTTGGCAGTCTGCCTTTTGAAAGTTATATCTTCCAATTTCTACCATCGATGTTAGAATT AGTTCTTAAATTGTGTCATCATATTTCTGCATTTGTTCATTTTAGAAAGAAGTGTGTGTTTTTTAATGCTATGCTCTTTT CTTTATGCTCAATGGTAAAACTTCTTATTTGAAGTTTGAAGACATAGTGTGGTATGGGGTGGCAGTGATGCTGGTGGAGG GATATTTGGTTAAATATGTTTCTTAAGTTCATTTTTGCTTACCATAGTGTGAACTAGGATTTCATTTCCTGACTGCATAT TCACTGAAATTTACATCAGTTCTGGAATCATTTTTTCCTTTAATGGTATACTACTGAAGATATATTTTTTTGACTTCCCT ATCAACTAGTGATGAAGATTAGGCATGGTATTGACTCAAGAGAGATAAATCTTTTATGATTTCTGAGTGTTGAATTTTCT TGTCATTAAGGTCCAAGCTACTGTCCAGGAGACACTGAAAAAGCATGAGCTTACTAGACCTCTAGCTACTAAAGAGTTGG AATGGTTTGCGGTATGCATAAGAGGATTTTCTTTGTCCTAACTAATATTGCTTAAATTACATCAGGGTTAGGTGATTTGA CAAACATTTTGTCAATTTTCACTTTGCAGGCCTCTGCCCTTTTGGCCTTACCTATTATTTTACTGGCTAGAGCTTTTTCT GCTATTTTCTGGTTAGTCTTAAATATCTTCTTCTAGATAAACATGCTGATTTTCGTTTTGTTGATCTGTGTGCCCTCTTG ATATTTATATTCGCATGTTTTTTCATCGGAACTGGTTGTTACAAACATTTTTTATCATTTGGTTGCAGCAGCAAAAAAGT GAATAAACCTGCTCGAAGTGGAAACACCCATCACGCTCGCCGTAAAGCTAAGCGAGTGCATCCAGACAAATAGATCATGT GAAGTTGGATTCCTGCTTTAATTTTTGGGAAGAGAAATTCAGGTATGTTGTTCTGTATTGACTCAGGATGCCTTTATCAC TATGGTTGTGAAGGCTGGTCCTGGTTTTACCTTATCTTATTTCATTTCATGTGGCATGCATAATGAAAAACACTTTGCGT TTCTTGCAGATGGGGTTTTCCTGTTTTGATGGGTTTATTTGGAGCTTTACTGTGGAGCTGTGGAGTTTAAGTATTTTGCT TCTCTTTTTTTGGGTGAGGCAAACATTAGGATGTATCACTGTAGAGCTGGGCACACAATATGCTTAGGCATTCATGTATT ATGGTTGTTATATTTGTTATTAGACCTCTTACTCCCTCTTTTCTGGCCTTCATTTTTCTTTCCATAAATTCTCGACATAG TAAAAATGTTCCCACTACATGTATGTTTATTACTAGGATGAAACTCTTGCGAATTGCGACGCATGGGTCCTTTAGAAACA GCTTGTTCTGCCTACTGTGGTTGTTAGGGGGAACAAGAAGGTTTTTATTATTTAAGAAACTGATTCATGGGCTCTTCGTT CGATTTTAAGTTTTTATTTTCTATTTTAAATTTCTTGAGTTATCCATTGAGAATTGCGTAATAAATTAATCAGTTATGTG TTAACTACATAGCAAACTAATTCATTATTAAAAAAAACATAGCAATGAAGTGTGTACAGTATTATTTTTCAACATAACAA TGTAGTGGGTACTTTCAAAAAAAAACAATGTAGTGGGTGGATTGAAATGTTATGATAAAAAGCTGGTCTACATAAAAATT GTTTTATATACAGGGTTTCGTTTCAGGCCCACTTGACTTGTGGGTATGCCAAGTTGTTCTGGTAGTCACAAATTCTCGCC ATTATCCTGTTTTATTAATAGCTCGGCCACCACTTTTGACGTTGATTAGAGTTATGGGAATATTGTTTCCATAATCGTGA ATTCTCGTCATTATCCCACTCCATTAAATACTTGACTACAATTTCATTGTTGGTTAGAGCTGGGTCATCACCCCGTTTCA TTAATGGCACAACCACCACCTCCCATGCTGGCCGTAGTTGGGGGACTATTGTTCTGCCAATCATAACCTCCGATGTCAAC TAGAGCTAGAAGGCTATTGAACCCCGAAATGGAACCGACCTACCACATGTCTTGCTGAGACATTGAACCCTGATATATAC TGACCTTCCTTATGTATGTCTGAAACGTTGAGCCTCGATCACGACATAACACATGCCTTGTTGAGACATTGAACTTCGAT CCCAACCTTCCCCTTGCTTCACCAAGACATCGAACCTTGTATTGACCCAGT
CDS sequence (LotjaGi1g1v0398000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGCCTCCGAAGCTCTTCCTATTCACGCTTTCCCTAGCCCTAATTTTCTCCATCTCCGCCGCCGACGCCGGTGTTTC CCACGACGATTCCGTCAAGATCCAATTAGATCAACTCAATTCCAGGATCCTAACTCTCGAATCTCAAATCAAGGACAAGT CTCAAGAGCTGAAGAAGAAGGATGAAGTAATAGCAGAAAAAGAGAAATTCATTCAAGATAAATCGAGTACCGTTGAATCC TTGCAGAATGAGGTTGCTTCTCTACAGAAAAAAGGGTCATTGGATGCTCAGGAGGAGGTGGGAAAGGCTCATGCACGTGC TGGTGAACTTCAGAAGCAGGTGGAGAATCTTAAAAGGGAACTTGAAAAACAAAACAAAGAGAAAGTAAACTGGGAAACTC GGGTAGCTGAGTTGGAGAAGAAGATTCATGATTTGAACTCAAAACTAGAGGATATTCAAAAGGTAAATGAGGAACAGAAG ACAAAAATTCGTAAAACTGAGCGTGCTCTTAAAGTTGCTGAGGAAGAAATGGTGAAGGCAAAGCTAGAGGCAAATTCCAA AGCCAGGGAGCTGATAGAGGCTCATGGTAATTGGCTTCCTCCTTGGCTTGCTGTACACTATATTCGCAGTAAGTCCTTGG TTGAGGCTCATTGGAATAAACATGGGAAACCTGTGCTGGAAGTGGTTACTCAGAAGGCCCTGGAGAAAAAGGCACAAGCT GAAAAGTGGGCTGAACCTCATCTGGAAACAGTTAAAACTAAATGGATCCCAGCTGTAAAACAACAGTGGTCTGAGGTGAA AACACAAGCTGAACCTCGTGTGCAATTATTGAGAACTAAATCTTTTGAAGTTTATGAGACATCAAAGAAGGCAATTGATC CCCACTTTAGCAATGCAAAAGAGTTTGTAGATCCTTATTATCAGGAAGCAAGAAAGTTAAGCAAGCCATACATTGATCAG GTTGCTGTCGCAGCCAAACCTCATGTTGATAAAGCACAAGTGGTTCTAAAGCCCTACACAAAGAAAGTCGTTCATGCTTA TAGAAATTTCTTACAATCGGCCACTACTTATCATCGCCAGGTCCAAGCTACTGTCCAGGAGACACTGAAAAAGCATGAGC TTACTAGACCTCTAGCTACTAAAGAGTTGGAATGGTTTGCGGCCTCTGCCCTTTTGGCCTTACCTATTATTTTACTGGCT AGAGCTTTTTCTGCTATTTTCTGCAAAAAAGTGAATAAACCTGCTCGAAGTGGAAACACCCATCACGCTCGCCGTAAAGC TAAGCGAGTGCATCCAGACAAATAG
Protein sequence (LotjaGi1g1v0398000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAPPKLFLFTLSLALIFSISAADAGVSHDDSVKIQLDQLNSRILTLESQIKDKSQELKKKDEVIAEKEKFIQDKSSTVES LQNEVASLQKKGSLDAQEEVGKAHARAGELQKQVENLKRELEKQNKEKVNWETRVAELEKKIHDLNSKLEDIQKVNEEQK TKIRKTERALKVAEEEMVKAKLEANSKARELIEAHGNWLPPWLAVHYIRSKSLVEAHWNKHGKPVLEVVTQKALEKKAQA EKWAEPHLETVKTKWIPAVKQQWSEVKTQAEPRVQLLRTKSFEVYETSKKAIDPHFSNAKEFVDPYYQEARKLSKPYIDQ VAVAAKPHVDKAQVVLKPYTKKVVHAYRNFLQSATTYHRQVQATVQETLKKHELTRPLATKELEWFAASALLALPIILLA RAFSAIFCKKVNKPARSGNTHHARRKAKRVHPDK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 21 | 21 | - | – | |
| Phobius | 1 | 21 | 21 | - | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 24 | 24 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 24 | 24 | - | – | |
| PANTHER | 5 | 434 | 430 | 7.2E-194 | – | |
| PANTHER | 5 | 434 | 430 | 7.2E-194 | – | |
| Phobius | 6 | 17 | 12 | - | – | |
| Phobius | 18 | 21 | 4 | - | – | |
| Phobius | 22 | 384 | 363 | - | – | |
| SUPERFAMILY | 31 | 189 | 159 | 6.41E-5 | – | |
| Coils | 36 | 56 | 21 | - | – | |
| Coils | 71 | 91 | 21 | - | – | |
| Coils | 100 | 190 | 91 | - | – | |
| SUPERFAMILY | 226 | 368 | 143 | 3.4E-10 | – | |
| Gene3D | 258 | 384 | 127 | 2.5E-6 | – | |
| TMHMM | 385 | 407 | 23 | - | – | |
| Phobius | 385 | 408 | 24 | - | – | |
| Phobius | 409 | 434 | 26 | - | – | |
| MobiDBLite | 414 | 434 | 21 | - | – | |
| MobiDBLite | 415 | 434 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0398000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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