Domain Predictions — View

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TIGR01273

Source: TIGRFAM

Description

speA: arginine decarboxylase

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0006527 View details of GO:0006527 AmiGO InterPro QuickGO	Biological process	Arginine catabolic process	The chemical reactions and pathways resulting in the breakdown of arginine, 2-amino-5-(carbamimidamido)pentanoic acid.	Subterm of GO:0006525 GO:0009065
GO:0008295 View details of GO:0008295 AmiGO InterPro QuickGO	Biological process	Spermidine biosynthetic process	The chemical reactions and pathways resulting in the formation of spermidine, N-(3-aminopropyl)-1,4-diaminobutane.	Subterm of GO:0006596 GO:0008216
GO:0008792 View details of GO:0008792 AmiGO InterPro QuickGO	Molecular function	Arginine decarboxylase activity	Catalysis of the reaction: L-arginine + H(+) = agmatine + CO(2).	Subterm of GO:0016831

Associated Lotus transcripts 4

Transcript	Name	Description	Predicted domains	Domain count
Lj1g3v3354480.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Arginine decarboxylase [Lotus japonicus] gi\|34495199\|emb\|CAE02645.1\|	Domains G3DSA:2.40.37.10 G3DSA:3.20.20.10 IPR000183 IPR002985 IPR009006 IPR022643 IPR022644 IPR022653 IPR022657 IPR029066 PF00278 PF02784 PIRSF001336 PR01179 PR01180 PS00878 PS00879 PTHR11482 PTHR11482:SF36 SSF50621 SSF51419 SignalP-TM_GRAM_POSITIVE TIGR01273 cd06830	24
Lj3g3v3386760.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: arginine decarboxylase-like [Cicer arietinum] gi\|502149391\|ref\|XP_004507509.1\|	Domains G3DSA:2.40.37.10 G3DSA:3.20.20.10 IPR000183 IPR002985 IPR009006 IPR022643 IPR022644 IPR022653 IPR022657 IPR029066 NON_CYTOPLASMIC_DOMAIN PF00278 PF02784 PIRSF001336 PR01179 PR01180 PS00878 PS00879 PTHR11482 PTHR11482:SF36 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF50621 SSF51419 SignalP-noTM_GRAM_NEGATIVE TIGR01273 cd06830	29
LotjaGi1g1v0562700.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Arginine decarboxylase; TAIR: AT4G34710.1 arginine decarboxylase 2; Swiss-Prot: sp\|Q39827\|SPE1_SOYBN Arginine decarboxylase; TrEMBL-Plants: tr\|Q70KF5\|Q70KF5_LOTJA Arginine decarboxylase; Found in the gene: LotjaGi1g1v0562700	Domains G3DSA:1.20.58.930 G3DSA:2.40.37.10 G3DSA:3.20.20.10 IPR000183 IPR002985 IPR009006 IPR022644 IPR022653 IPR022657 IPR029066 PF02784 PIRSF001336 PR01179 PR01180 PS00878 PS00879 PTHR43295 PTHR43295:SF3 SSF50621 SSF51419 TIGR01273 cd06830	22
LotjaGi3g1v0514900.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Arginine decarboxylase; TAIR: AT2G16500.1 arginine decarboxylase 1; Swiss-Prot: sp\|Q43075\|SPE1_PEA Arginine decarboxylase; TrEMBL-Plants: tr\|Q2PEQ1\|Q2PEQ1_TRIPR Arginine decarboxylase; Found in the gene: LotjaGi3g1v0514900	Domains G3DSA:1.20.58.930 G3DSA:2.40.37.10 G3DSA:3.20.20.10 IPR000183 IPR002985 IPR009006 IPR022644 IPR022653 IPR022657 IPR029066 NON_CYTOPLASMIC_DOMAIN PF02784 PIRSF001336 PR01179 PR01180 PS00878 PS00879 PTHR43295 PTHR43295:SF3 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF50621 SSF51419 SignalP-noTM TIGR01273 cd06830	28

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
cd06830	CDD	1	25.00