Domain Predictions — View

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IPR022657

Source: InterPro

Description

IPR022657 is a Orn/DAP/Arg decarboxylase 2, conserved site.

<p>These enzymes are collectively known as group IV decarboxylases [[cite:PUB00001452]]. Pyridoxal-dependent decarboxylases acting on ornithine, lysine, arginine and related substrates can be classified into two different families on the basis of sequence similarities [[cite:PUB00003632], [cite:PUB00001452]]. Members of this family while most probably evolutionary related, do not share extensive regions of sequence similarities. This conserved site contains a stretch of three consecutive glycine residues and has been proposed to be part of a substrate-binding region [[cite:PUB00002116]].</p>

This description is obtained from EB-eye REST.

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 11

Transcript	Name	Description	Predicted domains	Domain count
Lj1g3v2264900.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Ornithine decarboxylase [Lotus japonicus] gi\|34495197\|emb\|CAE02644.1\|	Domains G3DSA:2.40.37.10 G3DSA:3.20.20.10 IPR000183 IPR002433 IPR009006 IPR022643 IPR022644 IPR022653 IPR022657 IPR029066 PF00278 PF02784 PR01179 PR01182 PS00878 PS00879 PTHR11482 PTHR11482:SF6 SSF50621 SSF51419 SignalP-noTM_EUK cd00622	22
Lj1g3v2264910.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Ornithine decarboxylase [Lotus japonicus] gi\|34495197\|emb\|CAE02644.1\|	Domains G3DSA:2.40.37.10 G3DSA:3.20.20.10 IPR000183 IPR002433 IPR009006 IPR022643 IPR022644 IPR022653 IPR022657 IPR029066 PF00278 PF02784 PR01179 PR01182 PS00878 PS00879 PTHR11482 PTHR11482:SF6 SSF50621 SSF51419 cd00622	21
Lj1g3v3354480.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Arginine decarboxylase [Lotus japonicus] gi\|34495199\|emb\|CAE02645.1\|	Domains G3DSA:2.40.37.10 G3DSA:3.20.20.10 IPR000183 IPR002985 IPR009006 IPR022643 IPR022644 IPR022653 IPR022657 IPR029066 PF00278 PF02784 PIRSF001336 PR01179 PR01180 PS00878 PS00879 PTHR11482 PTHR11482:SF36 SSF50621 SSF51419 SignalP-TM_GRAM_POSITIVE TIGR01273 cd06830	24
Lj1g3v3354490.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Arginine decarboxylase [Lotus japonicus] gi\|34495199\|emb\|CAE02645.1\|	Domains G3DSA:2.40.37.10 G3DSA:3.20.20.10 IPR000183 IPR002985 IPR009006 IPR022643 IPR022644 IPR022657 IPR029066 PF00278 PF02784 PR01179 PR01180 PS00879 PTHR11482 PTHR11482:SF36 SSF50621 SSF51419 cd06830	19
Lj1g3v4580610.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: diaminopimelate decarboxylase 1, chloroplastic-like [Cicer arietinum] gi\|502161433\|ref\|XP_004512163.1\|	Domains G3DSA:2.40.37.10 G3DSA:3.20.20.10 IPR000183 IPR002986 IPR009006 IPR022643 IPR022644 IPR022653 IPR022657 IPR029066 MF_02120 PF00278 PF02784 PR01179 PR01181 PS00878 PS00879 PTHR11482 PTHR11482:SF5 SSF50621 SSF51419 TIGR01048 cd06828	23
Lj1g3v4580610.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: diaminopimelate decarboxylase 1, chloroplastic-like [Cicer arietinum] gi\|502161433\|ref\|XP_004512163.1\|	Domains G3DSA:2.40.37.10 G3DSA:3.20.20.10 IPR000183 IPR002986 IPR009006 IPR022643 IPR022644 IPR022653 IPR022657 IPR029066 PF00278 PF02784 PR01179 PR01181 PS00878 PS00879 PTHR11482 PTHR11482:SF5 SSF50621 SSF51419 TIGR01048 cd06828	22
Lj3g3v3386760.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: arginine decarboxylase-like [Cicer arietinum] gi\|502149391\|ref\|XP_004507509.1\|	Domains G3DSA:2.40.37.10 G3DSA:3.20.20.10 IPR000183 IPR002985 IPR009006 IPR022643 IPR022644 IPR022653 IPR022657 IPR029066 NON_CYTOPLASMIC_DOMAIN PF00278 PF02784 PIRSF001336 PR01179 PR01180 PS00878 PS00879 PTHR11482 PTHR11482:SF36 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF50621 SSF51419 SignalP-noTM_GRAM_NEGATIVE TIGR01273 cd06830	29
LotjaGi1g1v0432800.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Ornithine decarboxylase; TAIR: AT3G14390.1 Pyridoxal-dependent decarboxylase family protein; Swiss-Prot: sp\|P50134\|DCOR_DATST Ornithine decarboxylase; TrEMBL-Plants: tr\|Q70KF6\|Q70KF6_LOTJA Ornithine decarboxylase; Found in the gene: LotjaGi1g1v0432800	Domains G3DSA:2.40.37.10 G3DSA:3.20.20.10 IPR000183 IPR002433 IPR009006 IPR022643 IPR022644 IPR022653 IPR022657 IPR029066 PF00278 PF02784 PR01179 PR01182 PS00878 PS00879 PTHR11482 PTHR11482:SF61 SSF50621 SSF51419 SignalP-noTM cd00622	22
LotjaGi1g1v0562700.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Arginine decarboxylase; TAIR: AT4G34710.1 arginine decarboxylase 2; Swiss-Prot: sp\|Q39827\|SPE1_SOYBN Arginine decarboxylase; TrEMBL-Plants: tr\|Q70KF5\|Q70KF5_LOTJA Arginine decarboxylase; Found in the gene: LotjaGi1g1v0562700	Domains G3DSA:1.20.58.930 G3DSA:2.40.37.10 G3DSA:3.20.20.10 IPR000183 IPR002985 IPR009006 IPR022644 IPR022653 IPR022657 IPR029066 PF02784 PIRSF001336 PR01179 PR01180 PS00878 PS00879 PTHR43295 PTHR43295:SF3 SSF50621 SSF51419 TIGR01273 cd06830	22
LotjaGi1g1v0690900.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Diaminopimelate decarboxylase; TAIR: AT5G11880.1 Pyridoxal-dependent decarboxylase family protein; Swiss-Prot: sp\|Q94A94\|DCDA2_ARATH Diaminopimelate decarboxylase 2, chloroplastic; TrEMBL-Plants: tr\|A0A151TUY1\|A0A151TUY1_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0690900	Domains G3DSA:2.40.37.10 G3DSA:3.20.20.10 IPR000183 IPR002986 IPR009006 IPR022643 IPR022644 IPR022653 IPR022657 IPR029066 MF_02120 PF00278 PF02784 PR01179 PR01181 PS00878 PS00879 PTHR43727 PTHR43727:SF2 SSF50621 SSF51419 TIGR01048 cd06828	23
LotjaGi3g1v0514900.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Arginine decarboxylase; TAIR: AT2G16500.1 arginine decarboxylase 1; Swiss-Prot: sp\|Q43075\|SPE1_PEA Arginine decarboxylase; TrEMBL-Plants: tr\|Q2PEQ1\|Q2PEQ1_TRIPR Arginine decarboxylase; Found in the gene: LotjaGi3g1v0514900	Domains G3DSA:1.20.58.930 G3DSA:2.40.37.10 G3DSA:3.20.20.10 IPR000183 IPR002985 IPR009006 IPR022644 IPR022653 IPR022657 IPR029066 NON_CYTOPLASMIC_DOMAIN PF02784 PIRSF001336 PR01179 PR01180 PS00878 PS00879 PTHR43295 PTHR43295:SF3 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF50621 SSF51419 SignalP-noTM TIGR01273 cd06830	28

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
cd06830	CDD	1	9.09