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TIGR02730

Source: TIGRFAM

Description

carot_isom: carotene isomerase

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0016117
Biological process Carotenoid biosynthetic process The chemical reactions and pathways resulting in the formation of carotenoids, tetraterpenoid compounds in which two units of 4 isoprenoid residues joined head-to-tail are themselves joined tail-to-tail.
Subterm of
GO:0046608
Molecular function Carotenoid isomerase activity Catalysis of the isomerization of poly-cis-carotenoids to all-trans-carotenoids.
Subterm of

Associated Lotus transcripts 6

Transcript Name Description Predicted domains Domain count
Lj0g3v0245759.1
– PREDICTED: prolycopene isomerase, chloroplastic-like [Cicer arietinum] gi|502122189|ref|XP_004497623.1|
Domains
14
LotjaGi5g1v0108300.1
– Carotenoid isomerase; TAIR: AT1G06820.1 carotenoid isomerase; Swiss-Prot: sp|Q8S4R4|CRTSO_SOLLC Prolycopene isomerase, chloroplastic; TrEMBL-Plants: tr|A0A0B2PRP5|A0A0B2PRP5_GLYSO Prolycopene isomerase, chloroplastic; Found in the gene: LotjaGi5g1v0108300
Domains
15
LotjaGi5g1v0108300.3
– Carotenoid isomerase; TAIR: AT1G06820.1 carotenoid isomerase; Swiss-Prot: sp|Q8S4R4|CRTSO_SOLLC Prolycopene isomerase, chloroplastic; TrEMBL-Plants: tr|A0A0R0L5D6|A0A0R0L5D6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0108300
Domains
15
LotjaGi5g1v0108300.6
– Carotenoid isomerase; TAIR: AT1G06820.1 carotenoid isomerase; Swiss-Prot: sp|Q8S4R4|CRTSO_SOLLC Prolycopene isomerase, chloroplastic; TrEMBL-Plants: tr|A0A0B2PRP5|A0A0B2PRP5_GLYSO Prolycopene isomerase, chloroplastic; Found in the gene: LotjaGi5g1v0108300
Domains
14
LotjaGi5g1v0108300.7
– Carotenoid isomerase; TAIR: AT1G06820.1 carotenoid isomerase; Swiss-Prot: sp|Q8S4R4|CRTSO_SOLLC Prolycopene isomerase, chloroplastic; TrEMBL-Plants: tr|I1JGC5|I1JGC5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0108300
Domains
10
LotjaGi5g1v0108300.8
– Carotenoid isomerase; TAIR: AT1G06820.1 carotenoid isomerase; Swiss-Prot: sp|Q8S4R4|CRTSO_SOLLC Prolycopene isomerase, chloroplastic; TrEMBL-Plants: tr|A0A0B2PRP5|A0A0B2PRP5_GLYSO Prolycopene isomerase, chloroplastic; Found in the gene: LotjaGi5g1v0108300
Domains
10

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
TIGR02730 TIGRFAM 1 16.67