Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0108300 |
| Transcript ID | LotjaGi5g1v0108300.7 |
| Related isoforms 7 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Carotenoid isomerase; TAIR: AT1G06820.1 carotenoid isomerase; Swiss-Prot: sp|Q8S4R4|CRTSO_SOLLC Prolycopene isomerase, chloroplastic; TrEMBL-Plants: tr|I1JGC5|I1JGC5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0108300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:20634505..20640082) extracted from Lotus japonicus Gifu genome v1.2.
CTAAATTCTCAGTGGTATACTTCCAAGTATTACAAACTCCATTTACCTTACATTTGTGCAGGGTAATCTCAATTTGATAA CACAAGCTCTGGAAGCAGTTGGTTGTAAGATGCAGGTGGTACCGGATCCAACAACTGTTCATTTCCATCTACCAAACAAC CTCTCTGTTCGAGTGCACAGAGAATATGACAAATTCATCGAAGAGTTGACCTGTTATTTTCCCCATGAAAAGGAGGGTAT CCTCAAATTCTATGGTGAATGCTGGAAGGTTTGTCTCAATTGAGGTGACTGCAGCCCCCTTAAGGCATTTTTGCCTCAAC TTGTAATTCATTTTGTTAAGAGCTTACCTTTGTTTTGGCTAGATTTTCAATGCCCTGAATTCGTTGGAATTGAAGTCACT AGAGGAACCGCTCTACCTTTTTGGACAGTTTTTTCAGAAGCCGCTTGAATGCTTGACACTAGGTACTTTCATTTTATTTA TTTGTTTTAAATGAGAGGCTGCGAATTTAAAATTCTCACCCTATGCTTCCCTCAATACATCTTTTTTGAATCTTTAGTTA ATCTCATTGTTAAAAGATACTCCTCCTATCATTCAAAATAATAAGAAGATATCACTGGACTACATGTTCTTTACAATTAT CTGCTTAAATTTTCGCAAAACTAGTTCACTCAAAAATATTTATCCTACTATGAAGATCAGGACAAGATTTGACTTTGTGA TGCTTATGGAAATTCTCATGTGATTTATTTTTCATTTTTTAGAATAGAAGTGCTATAGACCCGGGGAATTATATCTAAGA AATGCATTTTTTTTTTTACAATGCCAAGCTGGGATAATTTGATAAACCTTCAAAAAGTGTATTTTCATCAATATGAGCAT CTGATGAACTTCTGTGTTAAACAAAGCAAAGGGTGTTACTGACCATGATTTTTCTTGGTATATTATGTCTGTACATTCAT GTGGAAGACTACTGAATAATAACAGTATATAAGTGATCAGGTTGTCCTTGACTGTGCAGGAACCATCAATGTTTTGATAT GAATTTTAGCCATTCGCTTTTCTGATGATGTTATTATATGGCAGCCTATTATTTGCCTCAAAATGCTGGTGCCATAGCTC GGAAGTACATTCAGGATCCACAGTTGTTGTCTTTCATAGATGCAGAGGTAGATATAACCACTTATTTAATTCAGTTAGAA CATAAGTTTCATTATTAAGGAAAATGTTAAATGTCGTGAAGATTTATTCTCTTCACACGAAATGTGTCACGTATGATAGT AACTATGTCAAAGACATTGATTCTAATGGGTCCCACGAAAGATGTTCGTGGGTGATTGTCTGGTCCCATAAGATAAATTT AGGCTAAAACACACATTGCCGCATCATTTGTACCTTTCTGTTAAAAGCTGTTTCCATGTGGAATAGCACTACTTTTTTTG AAAGCAGAAATAGCACTACTTATCTACTAATTCATTAATTATCCAAATTTTTGCTTCATTATTGGAAACTTTAATCCATT AAAAACTCTGGTATTGCAGTGTTTTATAGTGAGCACCGTCAATGCTTTGCAGACTCCAATGATCAATGCTGCCATGGTAT AATGGTTACTTGCTTATTTCATCTTTGTCTTAGAGGTTTCCGTTTTTAGCATCATTATTTGACTCTATTTTTGCCACCAG GTTCTATGTGACAGACACTTTGGTGGGATTAACTACCCTCTTGGAGGTGTTGGTGGAATTGCAAAGTCCTTGGCAAAAGG CTTAGCTGATCAGGGTAGTGAGATTCTTTACAAGGCAAATGTCACTAGTGTTATAATTGAGCAGGGCAAAGCTGTAAGTG AGATATGAGAATATACATAAGCATGACATATTTAGAAAAATGCATCTGTTTCTCAAGAATCGTGGTATACATTTTGCAGG TAGGAGTGAGGCTTTCAGATGGCAGGGAATTCTTTGCTAAAACCATAATATCAAATGCTACTAGATGGGATACATTTGGT TGGTTTCGAAAATAGATTTTTAAGATTATTTTTTGTTTTGTTCATATTGGAATGATTATCTTCTTGTCTTTCTCTTTCTA TTAGAAAGGCTCATGAGTTGTTTAGATTCGGGTTTGAGGTAAAATATACTTCAAGTCAATTATGATCCAAACCTAACCAA TCCAATTAAGATTAAGCTAGTTTGGTTCAGGTCATTGGATTAGGGTACAAAAATTAAATCATAAATTTGTTAGGTATTTA TCTGCATATATACCTTTATATATAAAATTTTAAACTTAATGTTACTACCAGTAAAATGTGGTTCTTTATTTTTTAATAGT GTTATATTACTCAAATCAATTTTAAATGTTAAAATCACTTCTACTTAAAAGTTAACCATAAGTAACTCATTAACTTTTTA ACCTAAAATGTGAAAATAAAATTGGATCGTAAATATGGCCAAAGACGCTTGATAATCCTAGATCGCAAGGTAAACATAAT TTTTAAATAAGATAAAAATAAGAAACGAGATAAATATCAAACTTCAAAAGAACAAATATAAAAAATTAAATATGACAAAT ATTAATTGGTGATCAGGTTAGTTCGAGTTGGAAAAAATAGTTCTATGTGTTCATTTGTTAACTAAAGTAACTATCGGGTT CAATCCAATCTGATGAACACTCTTACTTATGCGTTCGTTTGTTCTTAATCAGCTAAACCCAAATTGCTCATTCTTACATT GTAGGGAAGTTACTAAAGGGAGAGACACTTCCGAAGGAGGAAGAGAACTTCCAGAAAGTTTATGTTAAAGCTCCATCTTT TCTTTCAATTCACATGGGGGTTAAATCAGAGGTTTTGCCACCAGATACAGATTGTCACCATTTTATGCTTGAGGTAGTTG GAAGTTTCCTGACCTTAGATCTCTTAATCACCTTAATGAATTTGGATGAATAATCTTCTACACGTATTTTGTTGGAACTT GTCCAGAATAACTGGTCCAAATTGGAGGAGCCATATGGAAGTATCTTTTTAAGTATACCAACTATTCTTGATTCATCGTT GGCTCCTGAAGGTCATCATATCCTTCACATATTCACAACTTCTTCAATGGACGACTGGAAGGTAGGAAATACTGATTTGT TAGTTCTGATAAATAAGTTGAAACTTCCCCATGTGTGCTTCTGACTTTAGAAACTACCTTTTTTGTTCTTCCCTCCTGTT TTATCCATTTGCTGACTCAAATATCAAATGTCTGTTTTCTGTACCAGGGTCTCTCAGTTGAAGAATATGAGGCAAAAAAG CAGCTAGTAGCTGATGAAATCATCAGCAGATTAGAGAAGAAATTGTTTCCAGGTCTTAGATCATCCATCGATTTTATTGA GGTATGAGCTATAAACTGTGATCTCATATTTTGAGCAGCATTTCTGCAAGTAAAAAGCAAGTTGAAAATAAATCAAAATG GTGTGAGTGTCCTGCAGCTCTATTAGCTTAGTTACAAGTTAAAACTCAACTTCTATTTTTCTACACTGGTTGTAGTATTT TTAAGGTTAAAAATAGTTAATCTGGCAGCACATTTACTAGGAGTGGTTACAGTGGTCTAGTTTGTGGAACTATGATCTGT GTTATGGTTTTCAAATTCCTGTGGATAAATAAATAATCTATACTCTATAGTCATATTTCCTGAAAATAACTAATTGTAGT CTATGTCAGACCTCAATTCCCTCATGCTAATCGCAGTAAATATTAAACATAAATGTTAGTGCAACATAACTAACATTATT CTTGAAAGATGTCTTAGTACTTCCTGTTAGGATTCTGAATATTAGGCGTTTAGTTTATTTTACATTAGGAGTTTATCTTT ATTTTGGGAGTCCATCTTTTATTTTGGTAGTCTATCTTTATTTCTTACAAGTTAAGTCTATCTTTATTAAGAATAGTCTA TTATAAATAAGAGCTCTTTCATTAGGTTAGGAGGAAATTGATTATTGAAAAGTAAAAGGTTTACCTTGTAAGGGTTATCC CTTGTTAAGAAGGGTTCCTTCTTAGGTATTTTTTTCTAATAATATCAGTTATTTATCCAGAAAATTACCTCATTGCCCCT AGCCTTTATGTGTTTGGTTGTTAGGGAAACACAACCCTAACACTTCCATTGTTCATAAAACCTTTATTTCTTTGCTTTAG TCTAGGTGATTCTATAGCTGTCCTCAAATTTGATCCTTCTTGTGATGCTAGTATTTTTGTTAGAAGTGCTGGATGGACAA TGCCTATAGATAGTGGACAATAAAAGCTGCTCTAACTTCTAATTTTATCATTGGTATTAGCACTACCCCTATACATGATT TGTACGATGCTACTTACCTCTTTCTTTGGTAGAGAAGTTTGTAGAAGCAGACTTGCTATTATTTGTTTAACTGGATAAAA CTATCTCTTTATAATGTTAATAGGATTTCGTTTTGTATTTAATTTCTAAATCTTTATTATTTTGTGTATACTTTCTGAAA TTTTAAGCTCCATTGTAGATAGGGACACCAAAGACACACCGGCGATTCCTTGCTCGTAATGAGGGAACTTATGGACCAAT GCCACGTGGAATTCCAAAGGGGTTGTTGGGAATGCCGTTTAATACCACAGTAAGTTCACTTCCAAACAAGGAAGTATTAT AAAACTTGAAAAGTATAGGTTTTTTTAAGTTACCAATATATTACATATTGTACTAATCAATAAATACTTCTATTTCTTGA ATCCTTAAGCATACCTTTGAGGCACTCATAGTATGTTTTGAAATCCTAATAGAATTGATTGTCTCGGAAGAAGCTTCTGG GTGTCAAAATTGATTTTGAGGAAAAATAAGTTAATCCAAACTTGCTATACCTGAAACTGAACAACAGGTTTGGTTCTGTA GTGGTCTAGGATGCTGTTAGAATTTAATTGCTAGAAACATAATATAAAAGGTTTCACCTTTGTTTGTTCGCCTCGTAGTT AAAAAATTGAGATAGTTGATTAATGACAGATTGACAGTATTGATTAAAAGTCATCAATCAATAAAATTTTCAGGCGATAG ATGGTCTTTACTGTGTTGGAGACAGCTGTTTCCCTGGACAAGGTGTTATTGCTGTAGCTTTCTCAGGAGTTATGTGTGCT CATCGTGTAGCTGCAGATATTGGTAAGCAAATGCTTTCCTTGGAGTGCACATTGGTTTGACATTGCAGGTTTTCTATCAT GCTTTGCTATCAGTTAACAGTATGTTTGGAAACCAACCGCGTCACCATGTATAGCATAGAAACCACGTTAATTTTGAGTG TTTGTATTTACGTTCAAGTTGACCAAAAGCACATTTGCTCTAATGAAACAAGAGACTTGAAATGTGCGCTGACAAAAATA CAAACACTTTAATTCTGCTCAGTGTAGCTTCACCGTCAATGTGCCTCAGCGTGTGGTGCACAACGCGGAAGCAATCACCC ACTAAATTTACTATAATTGGATTTTATAGCACCCTCGTTTTGATTCTTTTCCCCTTCAATACAGGGTTGGAGAAAAAGTC ACCTGTTTTGGATACCGCACTGCTTGGGTTGCTTGGTTGGTTAAGAACACTGGCATGA
CDS sequence (LotjaGi5g1v0108300.7) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGGTGGTACCGGATCCAACAACTGTTCATTTCCATCTACCAAACAACCTCTCTGTTCGAGTGCACAGAGAATATGA CAAATTCATCGAAGAGTTGACCTGTTATTTTCCCCATGAAAAGGAGGGTATCCTCAAATTCTATGGTGAATGCTGGAAGA TTTTCAATGCCCTGAATTCGTTGGAATTGAAGTCACTAGAGGAACCGCTCTACCTTTTTGGACAGTTTTTTCAGAAGCCG CTTGAATGCTTGACACTAGCCTATTATTTGCCTCAAAATGCTGGTGCCATAGCTCGGAAGTACATTCAGGATCCACAGTT GTTGTCTTTCATAGATGCAGAGTGTTTTATAGTGAGCACCGTCAATGCTTTGCAGACTCCAATGATCAATGCTGCCATGG TTCTATGTGACAGACACTTTGGTGGGATTAACTACCCTCTTGGAGGTGTTGGTGGAATTGCAAAGTCCTTGGCAAAAGGC TTAGCTGATCAGGGTAGTGAGATTCTTTACAAGGCAAATGTCACTAGTGTTATAATTGAGCAGGGCAAAGCTGTAGGAGT GAGGCTTTCAGATGGCAGGGAATTCTTTGCTAAAACCATAATATCAAATGCTACTAGATGGGATACATTTGGGAAGTTAC TAAAGGGAGAGACACTTCCGAAGGAGGAAGAGAACTTCCAGAAAGTTTATGTTAAAGCTCCATCTTTTCTTTCAATTCAC ATGGGGGTTAAATCAGAGGTTTTGCCACCAGATACAGATTGTCACCATTTTATGCTTGAGAATAACTGGTCCAAATTGGA GGAGCCATATGGAAGTATCTTTTTAAGTATACCAACTATTCTTGATTCATCGTTGGCTCCTGAAGGTCATCATATCCTTC ACATATTCACAACTTCTTCAATGGACGACTGGAAGGGTCTCTCAGTTGAAGAATATGAGGCAAAAAAGCAGCTAGTAGCT GATGAAATCATCAGCAGATTAGAGAAGAAATTGTTTCCAGGTCTTAGATCATCCATCGATTTTATTGAGATAGGGACACC AAAGACACACCGGCGATTCCTTGCTCGTAATGAGGGAACTTATGGACCAATGCCACGTGGAATTCCAAAGGGGTTGTTGG GAATGCCGTTTAATACCACAGCGATAGATGGTCTTTACTGTGTTGGAGACAGCTGTTTCCCTGGACAAGGTGTTATTGCT GTAGCTTTCTCAGGAGTTATGTGTGCTCATCGTGTAGCTGCAGATATTGGGTTGGAGAAAAAGTCACCTGTTTTGGATAC CGCACTGCTTGGGTTGCTTGGTTGGTTAAGAACACTGGCATGA
Protein sequence (LotjaGi5g1v0108300.7) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQVVPDPTTVHFHLPNNLSVRVHREYDKFIEELTCYFPHEKEGILKFYGECWKIFNALNSLELKSLEEPLYLFGQFFQKP LECLTLAYYLPQNAGAIARKYIQDPQLLSFIDAECFIVSTVNALQTPMINAAMVLCDRHFGGINYPLGGVGGIAKSLAKG LADQGSEILYKANVTSVIIEQGKAVGVRLSDGREFFAKTIISNATRWDTFGKLLKGETLPKEEENFQKVYVKAPSFLSIH MGVKSEVLPPDTDCHHFMLENNWSKLEEPYGSIFLSIPTILDSSLAPEGHHILHIFTTSSMDDWKGLSVEEYEAKKQLVA DEIISRLEKKLFPGLRSSIDFIEIGTPKTHRRFLARNEGTYGPMPRGIPKGLLGMPFNTTAIDGLYCVGDSCFPGQGVIA VAFSGVMCAHRVAADIGLEKKSPVLDTALLGLLGWLRTLA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 440 | 440 | 4.6E-251 | – | |
| PANTHER | 1 | 440 | 440 | 4.6E-251 | – | |
| TIGRFAM | 2 | 417 | 416 | 8.0E-228 | ||
| SUPERFAMILY | 5 | 415 | 411 | 4.07E-34 | ||
| Pfam | 23 | 312 | 290 | 2.7E-6 | ||
| Gene3D | 99 | 354 | 256 | 5.4E-22 | – | |
| Gene3D | 144 | 392 | 249 | 5.4E-22 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Carotenoid biosynthetic process | The chemical reactions and pathways resulting in the formation of carotenoids, tetraterpenoid compounds in which two units of 4 isoprenoid residues joined head-to-tail are themselves joined tail-to-tail. | ||
| Molecular function | Oxidoreductase activity | Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. | ||
| Molecular function | Carotenoid isomerase activity | Catalysis of the isomerization of poly-cis-carotenoids to all-trans-carotenoids. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi5g1v0108300.7, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…