Domain Predictions — View

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cd04254

Source: CDD

Description

AAK_UMPK-PyrH-Ec

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0005737 View details of GO:0005737 AmiGO InterPro QuickGO	Cellular component	Cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.	Subterm of GO:0044424
GO:0006221 View details of GO:0006221 AmiGO InterPro QuickGO	Biological process	Pyrimidine nucleotide biosynthetic process	The chemical reactions and pathways resulting in the formation of a pyrimidine nucleotide, a compound consisting of nucleoside (a pyrimidine base linked to a deoxyribose or ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.	Subterm of GO:0006220 GO:0009165 GO:0072528
GO:0033862 View details of GO:0033862 AmiGO InterPro QuickGO	Molecular function	UMP kinase activity	Catalysis of the reaction: ATP + UMP = ADP + UDP.	Subterm of GO:0009041

Associated Lotus transcripts 4

Transcript	Name	Description	Predicted domains	Domain count
Lj1g3v1290360.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: uridylate kinase-like [Glycine max] gi\|356512819\|ref\|XP_003525113.1\|	Domains G3DSA:3.40.1160.10 IPR001048 IPR011817 IPR015963 MF_01220_B NON_CYTOPLASMIC_DOMAIN PF00696 PTHR21499 PTHR21499:SF23 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF53633 SignalP-TM_GRAM_POSITIVE TIGR02075 cd04254 mobidb-lite	18
Lj5g3v0705390.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: uridylate kinase-like [Cicer arietinum] gi\|502122127\|ref\|XP_004497592.1\|	Domains Coil G3DSA:3.40.1160.10 IPR001048 PF00696 PF13837 PTHR21499 PTHR21499:SF26 SSF53633 cd04254 mobidb-lite	10
LotjaGi4g1v0408200.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Uridylate kinase; TAIR: AT3G18680.1 Amino acid kinase family protein; Swiss-Prot: sp\|Q2JS42\|PYRH_SYNJA Uridylate kinase; TrEMBL-Plants: tr\|A0A151TLC2\|A0A151TLC2_CAJCA Uridylate kinase; Found in the gene: LotjaGi4g1v0408200	Domains G3DSA:3.40.1160.10 IPR001048 IPR015963 IPR036393 MF_01220_B NON_CYTOPLASMIC_DOMAIN PF00696 PTHR42833 PTHR42833:SF6 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF53633 SignalP-TM TIGR02075 cd04254 mobidb-lite	18
LotjaGi5g1v0089900.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Uridylate kinase; TAIR: AT3G10030.1 aspartate/glutamate/uridylate kinase family protein; Swiss-Prot: sp\|Q7VD61\|PYRH_PROMA Uridylate kinase; TrEMBL-Plants: tr\|V7BJN9\|V7BJN9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0089900	Domains Coil G3DSA:1.10.10.60 G3DSA:3.40.1160.10 IPR001048 IPR011817 IPR015963 IPR036393 MF_01220_B PF00696 PF13837 PTHR42833 PTHR42833:SF1 SSF53633 cd04254 mobidb-lite	15

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	25.00