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Lj1g3v1290360.1

Overview

Field Value
Gene ID Lj1g3v1290360
Transcript ID Lj1g3v1290360.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: uridylate kinase-like [Glycine max] gi|356512819|ref|XP_003525113.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
SIGNAL_PEPTIDE_N_REGION
1 1 1 – –
SignalP
SignalP-TM_GRAM_POSITIVE
1 18 18 – –
MobiDBLite
mobidb-lite
1 49 49 – –
Phobius
SIGNAL_PEPTIDE
1 18 18 – –
Phobius
SIGNAL_PEPTIDE_H_REGION
2 13 12 – –
Phobius
SIGNAL_PEPTIDE_C_REGION
14 18 5 – –
Phobius
NON_CYTOPLASMIC_DOMAIN
19 338 320 – –
PANTHER
PTHR21499:SF23
76 335 260 9.20E-152
IPR011817
PANTHER
PTHR21499
76 335 260 9.20E-152 –
Gene3D
G3DSA:3.40.1160.10
87 327 241 3.70E-87
IPR001048
SUPERFAMILY
SSF53633
92 327 236 1.44E-69
IPR001048
Hamap
MF_01220_B
92 328 237 43.594
IPR015963
TIGRFAM
TIGR02075
95 327 233 7.30E-93
IPR015963
CDD
cd04254
95 328 234 1.57E-147 –
Pfam
PF00696
96 307 212 3.40E-28
IPR001048

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005737
Cellular component Cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
Subterm of
GO:0006221
Biological process Pyrimidine nucleotide biosynthetic process The chemical reactions and pathways resulting in the formation of a pyrimidine nucleotide, a compound consisting of nucleoside (a pyrimidine base linked to a deoxyribose or ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.
Subterm of
GO:0009041
Molecular function Uridylate kinase activity Catalysis of the reaction: ATP + (d)UMP = ADP + (d)UDP.
Subterm of
GO:0033862
Molecular function UMP kinase activity Catalysis of the reaction: ATP + UMP = ADP + UDP.
Subterm of

Genome browser

LORE1 insertions 7

Expression data

Expression pattern

Expression pattern of Lj1g3v1290360.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v1290360.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.