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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0408200 |
| Transcript ID | LotjaGi4g1v0408200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Uridylate kinase; TAIR: AT3G18680.1 Amino acid kinase family protein; Swiss-Prot: sp|Q2JS42|PYRH_SYNJA Uridylate kinase; TrEMBL-Plants: tr|A0A151TLC2|A0A151TLC2_CAJCA Uridylate kinase; Found in the gene: LotjaGi4g1v0408200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:78431685..78434399) extracted from Lotus japonicus Gifu genome v1.2.
GGCAACCTCCCCAACACAAATTCACAAAGCAGAGCGAAAAACCTCTCAAGAGAAAGAGGGTTTTGCGGTAGCACCTTTCA CTGTCATGGCAATCTCCACCCCTATCCTCTCTTTCTCTTCTCTTTCTTCTTCTTCTTCATCTCTCTTCTCTTCAAAACCT TCTTCTACATGGACACTTCCTACCAATTCACCCTCCTCCTCCTCCTCCTCCAACCTCGCCATCCGCTCTTGTTACTCCGA CTTCAGTTCTTCCCCTGACTCCTTCAATTTCAGGTTCCTCCTCCAACTCTCTCTCTTTATATGTCGCTGTTGACCATGAA TTTCAGTCACCCATTAACTGTTTGTTGAAATGTTTCACACAGGAAACCTGAATTTGCATCCATGTCTCCGTTTGGACTGT CAGTGAATGAGTCCAGCAAGGCTCCATACAAATGGCGAAGGGTTTTGCTCAAGGTCAGTGGAGAAGCACTTAAAGGAGAT CAATCCCAGAATGAGAATATTGACCCTAAGGTTTGCAACCCAGTATTCATCTCTCATTCACACTCTTATATTGAAAAAAC ATTTGTGTGTGACTGAGTGTGACCCTCTTATATATGTTATATGCAGGTAACTATGGCCATTGCAAGGGAGGTAGCATCTG TCACTCGCCTTGGCGTTGAGGTCACTACCCAATTTTTTTTACACTGATACCTTCTGATTTCATTAATTGTAGTAATTTTT TTGCTACACACTCAAGCTGTTTGATATCAATTAGCTAATTGATTGCGTAAAATGTGCAGTGGTTTTGTAGTTATTGTTGT TGCTTTGTTTTGCGAAGTAACCTTTAGGGGAGTACAGAGTACTACATAGATTTTTTTTGTGGTCAGCATTAATTTTGGGA GCATTCATAGTTTCATACTATCATTCCATTTTAGGCAGTGTATCAAATATCCGCCGTGGCGGATTCTCATGCCGGGTTAT TGGCTTTCCGCCATGACCGATATCCCGCCATAATCTGCTAGAGTCCGCCATCCACCATCATTATTCGTCAAATATGGCGG GTTTTTAGCTCTCAGCCATAGTCCGCCATCCGCCATTGACAACACTGATTTTCGGCCGTTTGGCTTGAAACAATTCAAAC TTTTTTGCTAGTTTTCAAGCTTTGAATTGAAATTATTTGGCTGATTTTTCAGGTTGCACTTGTAGTTGGTGGAGGTAATA TTTTCCGTGGAGCTTCTTGGGCTGGAAGTGGCGGTCTAGACCGTTCATCGGCAGATTATATTGGGTATTTCCCTTAATCT TTCTTAATTAAGATTACCGTTGATTTTCTGTCAGGGCTTTTTTGCATGTATGTCGATGTTTGTCTTTTAGAGCTCTGATG GGCTAGTTCTTCACTTAAAATTACACTTTTGTAATCAATCCACTGTGCTCTGTTACTTAAAATGCATATTATGAGAGACA GTTTCCTGGATTTTACTAATTGTGGTTAATTATCCCCTAGGATGTTGGCAACCGTCATGAATGCTATATATCTTCAAGCA ACAATGGAGAGTATTGGCATTCCAACTAGGGTGCAGACTGCATTTCGCATGTCTGAGGTTGCAGAACCATATATACGCCG AAGGGCTGTGAGGCATTTGGAAAAAGGAAGGGTTGTCATTTTTGCTGCTGGAACTGGAAATCCGTTCTTTACCACAGACA CCGCAGCAGCGCTCCGATGTGCTGAAAGTAAGTTTTGCCAGTTTTATCATTGATGGCTTTGTTCATATTGTTTTCATTCT CACTTCTTGACAAATGATGTAAATTTTTCAAAAACCATTTATAAATTGGAGAATCAGCTCCTCTCATTTATTATGTTTGT GCTAAATTTGTTATTGCATCAGTATACGAAATGAAGTTCACTACTATTACTTATTTTTATTTTATCCTTTATTCAGTTAA CGCAGAAGTTGTACTCAAAGCAACAAATGTCGATGGAGTGTTTGATGACGATCCAAAGCGTAATCCAGAAGCACGTCTTC TTGACACACTAACATATCAGGAAGTAATTACAAAAGATCTATCGGTGATGGACTTGACTGCCATAACTTTATGCCAGGAA AATAACATTCCTGGTAAGTCTTGCAGACAAACGTTTATATGAACTATTCTTTTGTTTAATAGTTGAATTTACTCATATTG GTATCCAATTAATTGTCTCCCTATATAAAAAACTGAAGCAACTTATCCTTATAAGCTAACCCTGCCCTTCCCTTGTGGTG CAGTTGTTGTCTTCAATCTAAACAAACCAGGTAACATTGAGAAAGCAATTAAAGGCGAAAAGGTTGGCACTTTGATTGGG GGAACATGGAATTCCACCGTGTCAAGAACGTGAAAATATTTGAAGTCCAATTACTAAATGATTCTTTCCTATATAATCTT CCAGCTGAGGATGCCAAGAATACTAGGTACATTACTTTGCAATTGGTGGTTGGTTTTTGATGTACTTCAAGGGTGCTGCT GTTCTGATTCAAAATCTGTATATAATCTTATCCTAGAATTGCTTGTTTAATTTTATTAAACATCATTCAAGTAGCACTTT GTTTCCCTTGAAGCATAGAAATAGTATTGAAAAGAATTCATTGTAATTTTAGTCTATTTACTATAGTTTATGTGTGACAT TAGTACTCTTATTCATTTTTTCAGCAAATTTAGCCCTTCAAAGTTATTGTAAATCTTCTTCTACTTAAAATCCAC
CDS sequence (LotjaGi4g1v0408200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAATCTCCACCCCTATCCTCTCTTTCTCTTCTCTTTCTTCTTCTTCTTCATCTCTCTTCTCTTCAAAACCTTCTTC TACATGGACACTTCCTACCAATTCACCCTCCTCCTCCTCCTCCTCCAACCTCGCCATCCGCTCTTGTTACTCCGACTTCA GTTCTTCCCCTGACTCCTTCAATTTCAGGAAACCTGAATTTGCATCCATGTCTCCGTTTGGACTGTCAGTGAATGAGTCC AGCAAGGCTCCATACAAATGGCGAAGGGTTTTGCTCAAGGTCAGTGGAGAAGCACTTAAAGGAGATCAATCCCAGAATGA GAATATTGACCCTAAGGTAACTATGGCCATTGCAAGGGAGGTAGCATCTGTCACTCGCCTTGGCGTTGAGGTTGCACTTG TAGTTGGTGGAGGTAATATTTTCCGTGGAGCTTCTTGGGCTGGAAGTGGCGGTCTAGACCGTTCATCGGCAGATTATATT GGGATGTTGGCAACCGTCATGAATGCTATATATCTTCAAGCAACAATGGAGAGTATTGGCATTCCAACTAGGGTGCAGAC TGCATTTCGCATGTCTGAGGTTGCAGAACCATATATACGCCGAAGGGCTGTGAGGCATTTGGAAAAAGGAAGGGTTGTCA TTTTTGCTGCTGGAACTGGAAATCCGTTCTTTACCACAGACACCGCAGCAGCGCTCCGATGTGCTGAAATTAACGCAGAA GTTGTACTCAAAGCAACAAATGTCGATGGAGTGTTTGATGACGATCCAAAGCGTAATCCAGAAGCACGTCTTCTTGACAC ACTAACATATCAGGAAGTAATTACAAAAGATCTATCGGTGATGGACTTGACTGCCATAACTTTATGCCAGGAAAATAACA TTCCTGTTGTTGTCTTCAATCTAAACAAACCAGGTAACATTGAGAAAGCAATTAAAGGCGAAAAGGTTGGCACTTTGATT GGGGGAACATGGAATTCCACCGTGTCAAGAACGTGA
Protein sequence (LotjaGi4g1v0408200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAISTPILSFSSLSSSSSSLFSSKPSSTWTLPTNSPSSSSSSNLAIRSCYSDFSSSPDSFNFRKPEFASMSPFGLSVNES SKAPYKWRRVLLKVSGEALKGDQSQNENIDPKVTMAIAREVASVTRLGVEVALVVGGGNIFRGASWAGSGGLDRSSADYI GMLATVMNAIYLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAE VVLKATNVDGVFDDDPKRNPEARLLDTLTYQEVITKDLSVMDLTAITLCQENNIPVVVFNLNKPGNIEKAIKGEKVGTLI GGTWNSTVSRT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 22 | 22 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 23 | 23 | - | – | |
| Phobius | 1 | 1 | 1 | - | – | |
| PANTHER | 1 | 326 | 326 | 3.6E-165 | – | |
| PANTHER | 1 | 326 | 326 | 3.6E-165 | – | |
| Phobius | 2 | 13 | 12 | - | – | |
| MobiDBLite | 11 | 43 | 33 | - | – | |
| Phobius | 14 | 22 | 9 | - | – | |
| Phobius | 23 | 331 | 309 | - | – | |
| Gene3D | 78 | 324 | 247 | 4.6E-86 | ||
| Hamap | 85 | 321 | 237 | 44.29 | ||
| SUPERFAMILY | 85 | 320 | 236 | 1.7E-71 | ||
| TIGRFAM | 88 | 320 | 233 | 6.1E-95 | ||
| CDD | 88 | 321 | 234 | 7.00951E-152 | ||
| Pfam | 89 | 300 | 212 | 6.9E-30 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. | ||
| Biological process | Pyrimidine nucleotide biosynthetic process | The chemical reactions and pathways resulting in the formation of a pyrimidine nucleotide, a compound consisting of nucleoside (a pyrimidine base linked to a deoxyribose or ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar. | ||
| Molecular function | UMP kinase activity | Catalysis of the reaction: ATP + UMP = ADP + UDP. |
Expression pattern of LotjaGi4g1v0408200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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