Domain Predictions — View

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cd17934

Source: CDD

Description

DEXXQc_Upf1-like

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 4

Transcript	Name	Description	Predicted domains	Domain count
LotjaGi4g1v0018100.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	P-loop containing nucleoside triphosphate hydrolases superfamily protein, putative; TAIR: AT1G65810.3 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp\|O15050\|TRNK1_HUMAN TPR and ankyrin repeat-containing protein 1; TrEMBL-Plants: tr\|A0A0B2R102\|A0A0B2R102_GLYSO TPR and ankyrin repeat-containing protein 1; Found in the gene: LotjaGi4g1v0018100	Domains CYTOPLASMIC_DOMAIN Coil G3DSA:3.40.50.300 IPR014016 IPR027417 IPR034739 IPR039904 IPR041677 IPR041679 NON_CYTOPLASMIC_DOMAIN PF00580 PF13086 PF13087 PS51198 PTHR21529 SSF52540 TRANSMEMBRANE cd17934 cd18042 cd18808 mobidb-lite	21
LotjaGi4g1v0018300_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	P-loop containing nucleoside triphosphate hydrolases superfamily protein, putative; TAIR: AT1G65780.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp\|Q9HEH1\|RENT1_NEUCR Regulator of nonsense transcripts 1 homolog; TrEMBL-Plants: tr\|A0A0B2R102\|A0A0B2R102_GLYSO TPR and ankyrin repeat-containing protein 1; Found in the gene: LotjaGi4g1v0018300_LC	Domains G3DSA:3.40.50.300 IPR027417 IPR041677 PF13086 PTHR10887 PTHR10887:SF465 SSF52540 SignalP-noTM cd17934	9
LotjaGi5g1v0209800.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	P-loop containing nucleoside triphosphate hydrolases superfamily protein, putative; TAIR: AT1G65780.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp\|Q8BV79\|TRNK1_MOUSE TPR and ankyrin repeat-containing protein 1; TrEMBL-Plants: tr\|A0A0B2R102\|A0A0B2R102_GLYSO TPR and ankyrin repeat-containing protein 1; Found in the gene: LotjaGi5g1v0209800	Domains CYTOPLASMIC_DOMAIN Coil G3DSA:3.40.50.300 IPR014016 IPR027417 IPR034739 IPR039904 IPR041677 IPR041679 NON_CYTOPLASMIC_DOMAIN PF00580 PF13086 PF13087 PS51198 PTHR21529 SSF52540 TRANSMEMBRANE cd17934 cd18042 cd18807 cd18808 mobidb-lite	22
LotjaGi5g1v0209800.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	P-loop containing nucleoside triphosphate hydrolases superfamily protein, putative; TAIR: AT1G65780.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp\|Q8BV79\|TRNK1_MOUSE TPR and ankyrin repeat-containing protein 1; TrEMBL-Plants: tr\|A0A0B2R102\|A0A0B2R102_GLYSO TPR and ankyrin repeat-containing protein 1; Found in the gene: LotjaGi5g1v0209800	Domains CYTOPLASMIC_DOMAIN Coil G3DSA:3.40.50.300 IPR014016 IPR027417 IPR034739 IPR039904 IPR041677 IPR041679 NON_CYTOPLASMIC_DOMAIN PF00580 PF13086 PF13087 PS51198 PTHR21529 SSF52540 TRANSMEMBRANE cd17934 cd18042 cd18807 cd18808 mobidb-lite	22

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	25.00