Domain Predictions — View

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cd17983

Source: CDD

Description

DEXHc_DHX38

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 14

Transcript	Name	Description	Predicted domains	Domain count
LotjaGi3g1v0291100.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent RNA helicase, putative; TAIR: AT5G13010.1 RNA helicase family protein; Swiss-Prot: sp\|F4K2E9\|PRP16_ARATH Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7; TrEMBL-Plants: tr\|A0A0S3SG57\|A0A0S3SG57_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0291100	Domains Coil G3DSA:1.20.120.1080 G3DSA:3.40.50.300 IPR001650 IPR007502 IPR011545 IPR011709 IPR014001 IPR027417 PF00270 PF00271 PF04408 PF07717 PS51192 PS51194 PTHR18934 PTHR18934:SF85 SM00487 SM00490 SM00847 SSF52540 cd17983 cd18791 mobidb-lite	24
LotjaGi3g1v0291100.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent RNA helicase, putative; TAIR: AT5G13010.1 RNA helicase family protein; Swiss-Prot: sp\|F4K2E9\|PRP16_ARATH Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7; TrEMBL-Plants: tr\|A0A0S3SG57\|A0A0S3SG57_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0291100	Domains Coil G3DSA:1.20.120.1080 G3DSA:3.40.50.300 IPR001650 IPR007502 IPR011545 IPR011709 IPR014001 IPR027417 PF00270 PF00271 PF04408 PF07717 PS51192 PS51194 PTHR18934 PTHR18934:SF85 SM00487 SM00490 SM00847 SSF52540 cd17983 cd18791 mobidb-lite	24
LotjaGi3g1v0291100.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent RNA helicase, putative; TAIR: AT5G13010.1 RNA helicase family protein; Swiss-Prot: sp\|F4K2E9\|PRP16_ARATH Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7; TrEMBL-Plants: tr\|A0A0S3SG57\|A0A0S3SG57_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0291100	Domains Coil G3DSA:1.20.120.1080 G3DSA:3.40.50.300 IPR001650 IPR007502 IPR011545 IPR011709 IPR014001 IPR027417 PF00270 PF00271 PF04408 PF07717 PS51192 PS51194 PTHR18934 PTHR18934:SF85 SM00487 SM00490 SM00847 SSF52540 cd17983 cd18791 mobidb-lite	24
LotjaGi3g1v0291100.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent RNA helicase, putative; TAIR: AT5G13010.1 RNA helicase family protein; Swiss-Prot: sp\|F4K2E9\|PRP16_ARATH Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7; TrEMBL-Plants: tr\|A0A0S3SG57\|A0A0S3SG57_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0291100	Domains Coil G3DSA:1.20.120.1080 G3DSA:3.40.50.300 IPR001650 IPR007502 IPR011545 IPR011709 IPR014001 IPR027417 PF00270 PF00271 PF04408 PF07717 PS51192 PS51194 PTHR18934 PTHR18934:SF85 SM00487 SM00490 SM00847 SSF52540 cd17983 cd18791 mobidb-lite	24
LotjaGi3g1v0291100.5 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent RNA helicase, putative; TAIR: AT5G13010.1 RNA helicase family protein; Swiss-Prot: sp\|F4K2E9\|PRP16_ARATH Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7; TrEMBL-Plants: tr\|A0A151SUL8\|A0A151SUL8_CAJCA Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16; Found in the gene: LotjaGi3g1v0291100	Domains Coil G3DSA:1.20.120.1080 G3DSA:3.40.50.300 IPR001650 IPR007502 IPR011545 IPR011709 IPR014001 IPR027417 PF00270 PF00271 PF04408 PF07717 PS51192 PS51194 PTHR18934 PTHR18934:SF85 SM00487 SM00490 SM00847 SSF52540 cd17983 cd18791 mobidb-lite	24
LotjaGi6g1v0013100.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent RNA helicase, putative; TAIR: AT5G13010.1 RNA helicase family protein; Swiss-Prot: sp\|F4K2E9\|PRP16_ARATH Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7; TrEMBL-Plants: tr\|A0A151SUL8\|A0A151SUL8_CAJCA Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16; Found in the gene: LotjaGi6g1v0013100	Domains Coil G3DSA:1.20.120.1080 G3DSA:3.40.50.300 IPR001650 IPR007502 IPR011545 IPR011709 IPR014001 IPR027417 PF00270 PF00271 PF04408 PF07717 PS51192 PS51194 PTHR18934 PTHR18934:SF85 SM00487 SM00490 SM00847 SSF52540 cd17983 cd18791 mobidb-lite	24
LotjaGi6g1v0013100.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent RNA helicase, putative; TAIR: AT5G13010.1 RNA helicase family protein; Swiss-Prot: sp\|F4K2E9\|PRP16_ARATH Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7; TrEMBL-Plants: tr\|A0A151SUL8\|A0A151SUL8_CAJCA Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16; Found in the gene: LotjaGi6g1v0013100	Domains Coil G3DSA:1.20.120.1080 G3DSA:3.40.50.300 IPR001650 IPR007502 IPR011545 IPR011709 IPR014001 IPR027417 PF00270 PF00271 PF04408 PF07717 PS51192 PS51194 PTHR18934 PTHR18934:SF85 SM00487 SM00490 SM00847 SSF52540 cd17983 cd18791 mobidb-lite	24
LotjaGi6g1v0013100.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent RNA helicase, putative; TAIR: AT5G13010.1 RNA helicase family protein; Swiss-Prot: sp\|F4K2E9\|PRP16_ARATH Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7; TrEMBL-Plants: tr\|A0A151SUL8\|A0A151SUL8_CAJCA Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16; Found in the gene: LotjaGi6g1v0013100	Domains Coil G3DSA:1.20.120.1080 G3DSA:3.40.50.300 IPR001650 IPR007502 IPR011545 IPR011709 IPR014001 IPR027417 PF00270 PF00271 PF04408 PF07717 PS51192 PS51194 PTHR18934 PTHR18934:SF85 SM00487 SM00490 SM00847 SSF52540 cd17983 cd18791 mobidb-lite	24
LotjaGi6g1v0013100.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent RNA helicase, putative; TAIR: AT5G13010.1 RNA helicase family protein; Swiss-Prot: sp\|F4K2E9\|PRP16_ARATH Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7; TrEMBL-Plants: tr\|A0A151SUL8\|A0A151SUL8_CAJCA Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16; Found in the gene: LotjaGi6g1v0013100	Domains Coil G3DSA:1.20.120.1080 G3DSA:3.40.50.300 IPR001650 IPR007502 IPR011545 IPR011709 IPR014001 IPR027417 PF00270 PF00271 PF04408 PF07717 PS51192 PS51194 PTHR18934 PTHR18934:SF85 SM00487 SM00490 SM00847 SSF52540 cd17983 cd18791 mobidb-lite	24
LotjaGi6g1v0013100.5 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent RNA helicase, putative; TAIR: AT5G13010.1 RNA helicase family protein; Swiss-Prot: sp\|F4K2E9\|PRP16_ARATH Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7; TrEMBL-Plants: tr\|A0A151SUL8\|A0A151SUL8_CAJCA Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16; Found in the gene: LotjaGi6g1v0013100	Domains Coil G3DSA:1.20.120.1080 G3DSA:3.40.50.300 IPR001650 IPR007502 IPR011545 IPR011709 IPR014001 IPR027417 PF00270 PF00271 PF04408 PF07717 PS51192 PS51194 PTHR18934 PTHR18934:SF85 SM00487 SM00490 SM00847 SSF52540 cd17983 cd18791 mobidb-lite	24
LotjaGi6g1v0013100.6 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent RNA helicase, putative; TAIR: AT5G13010.1 RNA helicase family protein; Swiss-Prot: sp\|F4K2E9\|PRP16_ARATH Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7; TrEMBL-Plants: tr\|A0A151SUL8\|A0A151SUL8_CAJCA Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16; Found in the gene: LotjaGi6g1v0013100	Domains Coil G3DSA:1.20.120.1080 G3DSA:3.40.50.300 IPR001650 IPR007502 IPR011545 IPR011709 IPR014001 IPR027417 PF00270 PF00271 PF04408 PF07717 PS51192 PS51194 PTHR18934 PTHR18934:SF85 SM00487 SM00490 SM00847 SSF52540 cd17983 cd18791 mobidb-lite	24
LotjaGi6g1v0036100_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent RNA helicase, putative; TAIR: AT5G13010.1 RNA helicase family protein; Swiss-Prot: sp\|F4K2E9\|PRP16_ARATH Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7; TrEMBL-Plants: tr\|G7IUG0\|G7IUG0_MEDTR Pre-mRNA-splicing factor ATP-dependent RNA helicase; Found in the gene: LotjaGi6g1v0036100_LC	Domains G3DSA:1.10.10.2130 G3DSA:3.40.50.300 IPR001650 IPR011545 IPR014001 IPR027417 IPR042035 PF00270 PF00271 PS51192 PS51194 PTHR18934 PTHR18934:SF85 SM00487 SM00490 SSF52540 cd17983 cd18791 mobidb-lite	19
LotjaGi6g1v0036100_LC.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent RNA helicase, putative; TAIR: AT5G13010.1 RNA helicase family protein; Swiss-Prot: sp\|F4K2E9\|PRP16_ARATH Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7; TrEMBL-Plants: tr\|G7IUG0\|G7IUG0_MEDTR Pre-mRNA-splicing factor ATP-dependent RNA helicase; Found in the gene: LotjaGi6g1v0036100_LC	Domains G3DSA:1.10.10.2130 G3DSA:3.40.50.300 IPR001650 IPR011545 IPR014001 IPR027417 IPR042035 PF00270 PF00271 PS51192 PS51194 PTHR18934 PTHR18934:SF85 SM00487 SM00490 SSF52540 cd17983 cd18791 mobidb-lite	19
LotjaGi6g1v0036100_LC.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent RNA helicase, putative; TAIR: AT5G13010.1 RNA helicase family protein; Swiss-Prot: sp\|F4K2E9\|PRP16_ARATH Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7; TrEMBL-Plants: tr\|G7IUG0\|G7IUG0_MEDTR Pre-mRNA-splicing factor ATP-dependent RNA helicase; Found in the gene: LotjaGi6g1v0036100_LC	Domains G3DSA:3.40.50.300 IPR014001 IPR027417 PS51192 PTHR18934 PTHR18934:SF85 SM00487 SSF52540 cd17983 cd18791	10

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
cd18791	CDD	1	7.14