Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
IPR042035 is a DEAH helicase, winged-helix domain.
<p>The DEAH/RNA helicase A (RHA) helicase family comprises proteins involved in splicing, ribosome biogenesis and transcription regulation [[cite:PUB00092307]]. Structurally, the domain represented by this superfamily contains a winged-helix with a weakly defined β-sheet [[cite:PUB00092308]].</p>
This description is obtained from EB-eye REST.
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | ATP-dependent RNA helicase family protein; TAIR: AT3G26560.1 ATP-dependent RNA helicase; Swiss-Prot: sp|Q38953|DEAH5_ARATH Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5; TrEMBL-Plants: tr|A0A1J7IMS8|A0A1J7IMS8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0008200 | 15 | ||
| – | ATP-dependent RNA helicase, putative; TAIR: AT5G10370.1 helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-like protein; Swiss-Prot: sp|F4KGU4|DEAHC_ARATH ATP-dependent RNA helicase DEAH12, chloroplastic; TrEMBL-Plants: tr|G7J375|G7J375_MEDTR Helicase, IBR and zinc finger protein; Found in the gene: LotjaGi5g1v0357200 | 40 | ||
| – | ATP-dependent RNA helicase, putative; TAIR: AT5G10370.1 helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-like protein; Swiss-Prot: sp|F4KGU4|DEAHC_ARATH ATP-dependent RNA helicase DEAH12, chloroplastic; TrEMBL-Plants: tr|A0A0B2RGE0|A0A0B2RGE0_GLYSO Uncharacterized protein; Found in the gene: LotjaGi5g1v0357200 | 37 | ||
| – | ATP-dependent RNA helicase, putative; TAIR: AT5G13010.1 RNA helicase family protein; Swiss-Prot: sp|F4K2E9|PRP16_ARATH Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7; TrEMBL-Plants: tr|G7IUG0|G7IUG0_MEDTR Pre-mRNA-splicing factor ATP-dependent RNA helicase; Found in the gene: LotjaGi6g1v0036100_LC | 19 | ||
| – | ATP-dependent RNA helicase, putative; TAIR: AT5G13010.1 RNA helicase family protein; Swiss-Prot: sp|F4K2E9|PRP16_ARATH Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7; TrEMBL-Plants: tr|G7IUG0|G7IUG0_MEDTR Pre-mRNA-splicing factor ATP-dependent RNA helicase; Found in the gene: LotjaGi6g1v0036100_LC | 19 | ||
| – | ATP-dependent RNA helicase, putative; TAIR: AT5G13010.1 RNA helicase family protein; Swiss-Prot: sp|F4K2E9|PRP16_ARATH Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7; TrEMBL-Plants: tr|W9RS86|W9RS86_9ROSA Pre-mRNA-splicing factor ATP-dependent RNA helicase; Found in the gene: LotjaGi6g1v0036100_LC | 11 | ||
| – | ATP-dependent RNA helicase, putative; TAIR: AT5G13010.1 RNA helicase family protein; Swiss-Prot: sp|F4K2E9|PRP16_ARATH Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7; TrEMBL-Plants: tr|W9RS86|W9RS86_9ROSA Pre-mRNA-splicing factor ATP-dependent RNA helicase; Found in the gene: LotjaGi6g1v0036100_LC | 11 | ||
| – | ATP-dependent RNA helicase, putative; TAIR: AT5G10370.1 helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-like protein; Swiss-Prot: sp|F4KGU4|DEAHC_ARATH ATP-dependent RNA helicase DEAH12, chloroplastic; TrEMBL-Plants: tr|G7J375|G7J375_MEDTR Helicase, IBR and zinc finger protein; Found in the gene: LotjaGi6g1v0090600 | 40 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| mobidb-lite | MobiDBLite | 1 | 12.50 |