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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0013100 |
| Transcript ID | LotjaGi6g1v0013100.6 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent RNA helicase, putative; TAIR: AT5G13010.1 RNA helicase family protein; Swiss-Prot: sp|F4K2E9|PRP16_ARATH Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7; TrEMBL-Plants: tr|A0A151SUL8|A0A151SUL8_CAJCA Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16; Found in the gene: LotjaGi6g1v0013100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:2443121..2445896) extracted from Lotus japonicus Gifu genome v1.2.
AACGAGAAACGAAAAGAGTTAGTTTGTTCGGTTATTCCTAGGTTAGGGTTTTGTCATGACAGAGACGATGTTAATGTTTG GCGGCGGCGGCGGCGAGGACAGAGTGAAGTTTGTGGCGAGAAAAAGAAAAGTGCGAGAAGATGTTGTTGGTAGACGCAGT TCTGTGTATGATGCTGTTGTTGCGAAGAAGAAATTGTCTCACTGGGAGGACCGACAATTGATTAATTCAGGTGTTGTTAG AAGAGGTATTCAGACTTGTGAATTTGATGATGATGAAGAAGAACACACAAAGGTTACTCTTCTTGTCCATGATACAAAGC CTCCTTTTCTTGATGGCAGACTTGTTTTCACCAAGCAGGCAGACCCAATAATGCCAATCAAAGATCCAACCTCTGACATG GCCATAATTTCCTGCAAAGGGTCCAATCTAGTCCGAAAAATCCATGAGAAGCAGAGTATGGATAAATCTCGCAAGCACTT TTGGGAGCTAGCAGGTTCAAAGCTTGGTGATATCTTAGGAGTTGAGAAGACAGCAGAAGAGATGGATGCAGTGGGTCAAG ATGGTAAAATCGATTTACCTAAGTTTTCACAGCACTTGAACAAGAGGGAAGAAGCCGTGAGTGAGTTTGCTAAGTCAAAA TCCATGTCAGAGCAAAGGCAATACCTGCCAATTTTTTCAGTGCGAGAAGAGTTATTGCAGGTCATTCGCGAAAATCAGGT CGTGGTAGTGGTTGGAGAAACTGGTTCAGGAAAATCAACCCAATTGGCACAGTATCTTCATGAGGATGGCTATACTGTAG GTGGTGGTATTGTAGGTTGCACGCAGCCGAGGCGTGTGGCAGCTATGAGTGTTGCTAAGAGAGTTAGTGAGGAGATGGAA ACCGAGTTGGGTGATCAAGTTGGTTATGCTATCCGTTTTGAAGATGTCACTGGCCCAAATACCATTATAAAGTACATGAC TGATGGGGTACTTCTGCGCGAAACACTCAAAGACTCTGATCTAGACAAATATCGGGTTATTGTCATGGATGAAGCCCATG AAAGATCATTAAACACAGATGTTCTTTTTGGAATTCTCAAGAAAGTTGTAGCTCAACGTCGCGATTTCAAGCTAATTGTC ACTTCAGCTACCCTCAATGCACAGAAATTTTCAAATTTCTTTGGAAGTGCACCTGTTTTTCATATTCCTGGGAGAACATT TGATGTGAATACAATATGGAGTAAAACCCCTTGTGAAGACTATGTGGAAGGTGCAGTGAAGCAGGCTATGACTATTCACC TAACCAGCCCTCCAGGTGACATCCTTATCTTCATGACTGGCCAAGATGACATTGAGGCAGCTTGCTATGCCCTTGCTGAA AGAATGGACCAGATCATGGTGTCCTCTTCTTCTTCAAAGAAACAAGTTCCTAAACTATTGATCCTTCCCATATACTCTCA ACTCCCTGCTGACTTGCAAGCCAAAATTTTTCAGAAAGCTGAAGATGGAGCCCGAAAATGCATTGTCGCCACTAATATTG CAGAGACATCCTTGACTGTGGACGGCATTCACTATGTCATAGATACAGGCTATGGTAAAATGAAGGTGTATAACCCTAGG TTGGGCATGGACGCTCTCCAAGTCTTCCCAGTTAGCCGTGCTGCTGCGGACCAGCGTGCTGGTCGAGCCGGCAGAACTGG ACCCGGTACTTGCTATCGGCTGTATACTGAGAGCGCTTACCTGAATGAGATGCTTCCCAGTCCCGTTCCAGAGATCCAGA GGGCCAACCTCAGCAACGTGATCTTGCTGCTGAAATCCCTCAGAGTTGAAGACGTGCTTGATTTCGATTTCATGGATCCA CCCCCGCGAGATAACATCCTCAACTCTATGTACCAGTTGTGGGTGTTGGGAGCCCTGAACAATGTAGGAGGATTAACCGA TCTCGGCTGGAAAATGGTCGAGTTTCCACTCGACCCTCCGCTCGCGAAGATGCTTCTGATGGGCGAAAAGCTAGGCTGCC TCGAGGAGGTTCTAACCATCGTCTCGATGCTTTCCGTACCATCCGTTTTCTTCCGACCCAAGGACCGAGCTGAGGAGAGT GATGCTGCGCGGGAAAGATTTTCCGTTCCGGAATCCGATCATTTGACCCTCTACAACGTTTACCAGCAGTGGAAACAGCA TGACTACCGAGGGGATTGGTGCAATGACCACTTTTTACATGTTAAAGGTCTACGAAAGGCTAGAGAGGTTAGATCCCAGC TGCTCGACATCCTCAAGAAGCTTAACATTCCCTTGACCACATGCTTTCCTGATACTGACATTGTCAGAAAAGCGGTTTGT TCCGCCTACTTCCACAACTCGGCCAGATCAAAGGGGGTACGGGAATACATCAACTGCCGGAGTGGGATGCCGTGCCACCT TCACCCCAGCAGCGCTCTATACGGTATGGGTTGCACTCCCGAGTACGTTGTCTATCACGAGTTGGTCCTGACCTCGAAGG AGTACATGCAGTGTACCACAGCAGTGGAGCCCCAGTGGCTGGCCGAACTGGGACCCATGTTTTTCTCTATTAAGGAGTCT GATACATCGTTACTGGAACACAAGAAGAAACAAAATCAGGAGAAAACAAGCATGGAGGAGGAGATGGAGAATTTGGAGAA GGTACAAGCAGAGGTTGAGAGAAAAAGGAAACAGAAGGAGAAGGAAAAGATGGCTCAGCATCAGCAGCAAATTTCCATGC CAGGTTTAAGAAAGAATTCTTCCACATACATGAGACCAAAGAAGCTTGGTTTGTAA
CDS sequence (LotjaGi6g1v0013100.6) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACAGAGACGATGTTAATGTTTGGCGGCGGCGGCGGCGAGGACAGAGTGAAGTTTGTGGCGAGAAAAAGAAAAGTGCG AGAAGATGTTGTTGGTAGACGCAGTTCTGTGTATGATGCTGTTGTTGCGAAGAAGAAATTGTCTCACTGGGAGGACCGAC AATTGATTAATTCAGGTGTTGTTAGAAGAGGTATTCAGACTTGTGAATTTGATGATGATGAAGAAGAACACACAAAGGTT ACTCTTCTTGTCCATGATACAAAGCCTCCTTTTCTTGATGGCAGACTTGTTTTCACCAAGCAGGCAGACCCAATAATGCC AATCAAAGATCCAACCTCTGACATGGCCATAATTTCCTGCAAAGGGTCCAATCTAGTCCGAAAAATCCATGAGAAGCAGA GTATGGATAAATCTCGCAAGCACTTTTGGGAGCTAGCAGGTTCAAAGCTTGGTGATATCTTAGGAGTTGAGAAGACAGCA GAAGAGATGGATGCAGTGGGTCAAGATGGTAAAATCGATTTACCTAAGTTTTCACAGCACTTGAACAAGAGGGAAGAAGC CGTGAGTGAGTTTGCTAAGTCAAAATCCATGTCAGAGCAAAGGCAATACCTGCCAATTTTTTCAGTGCGAGAAGAGTTAT TGCAGGTCATTCGCGAAAATCAGGTCGTGGTAGTGGTTGGAGAAACTGGTTCAGGAAAATCAACCCAATTGGCACAGTAT CTTCATGAGGATGGCTATACTGTAGGTGGTGGTATTGTAGGTTGCACGCAGCCGAGGCGTGTGGCAGCTATGAGTGTTGC TAAGAGAGTTAGTGAGGAGATGGAAACCGAGTTGGGTGATCAAGTTGGTTATGCTATCCGTTTTGAAGATGTCACTGGCC CAAATACCATTATAAAGTACATGACTGATGGGGTACTTCTGCGCGAAACACTCAAAGACTCTGATCTAGACAAATATCGG GTTATTGTCATGGATGAAGCCCATGAAAGATCATTAAACACAGATGTTCTTTTTGGAATTCTCAAGAAAGTTGTAGCTCA ACGTCGCGATTTCAAGCTAATTGTCACTTCAGCTACCCTCAATGCACAGAAATTTTCAAATTTCTTTGGAAGTGCACCTG TTTTTCATATTCCTGGGAGAACATTTGATGTGAATACAATATGGAGTAAAACCCCTTGTGAAGACTATGTGGAAGGTGCA GTGAAGCAGGCTATGACTATTCACCTAACCAGCCCTCCAGGTGACATCCTTATCTTCATGACTGGCCAAGATGACATTGA GGCAGCTTGCTATGCCCTTGCTGAAAGAATGGACCAGATCATGGTGTCCTCTTCTTCTTCAAAGAAACAAGTTCCTAAAC TATTGATCCTTCCCATATACTCTCAACTCCCTGCTGACTTGCAAGCCAAAATTTTTCAGAAAGCTGAAGATGGAGCCCGA AAATGCATTGTCGCCACTAATATTGCAGAGACATCCTTGACTGTGGACGGCATTCACTATGTCATAGATACAGGCTATGG TAAAATGAAGGTGTATAACCCTAGGTTGGGCATGGACGCTCTCCAAGTCTTCCCAGTTAGCCGTGCTGCTGCGGACCAGC GTGCTGGTCGAGCCGGCAGAACTGGACCCGGTACTTGCTATCGGCTGTATACTGAGAGCGCTTACCTGAATGAGATGCTT CCCAGTCCCGTTCCAGAGATCCAGAGGGCCAACCTCAGCAACGTGATCTTGCTGCTGAAATCCCTCAGAGTTGAAGACGT GCTTGATTTCGATTTCATGGATCCACCCCCGCGAGATAACATCCTCAACTCTATGTACCAGTTGTGGGTGTTGGGAGCCC TGAACAATGTAGGAGGATTAACCGATCTCGGCTGGAAAATGGTCGAGTTTCCACTCGACCCTCCGCTCGCGAAGATGCTT CTGATGGGCGAAAAGCTAGGCTGCCTCGAGGAGGTTCTAACCATCGTCTCGATGCTTTCCGTACCATCCGTTTTCTTCCG ACCCAAGGACCGAGCTGAGGAGAGTGATGCTGCGCGGGAAAGATTTTCCGTTCCGGAATCCGATCATTTGACCCTCTACA ACGTTTACCAGCAGTGGAAACAGCATGACTACCGAGGGGATTGGTGCAATGACCACTTTTTACATGTTAAAGGTCTACGA AAGGCTAGAGAGGTTAGATCCCAGCTGCTCGACATCCTCAAGAAGCTTAACATTCCCTTGACCACATGCTTTCCTGATAC TGACATTGTCAGAAAAGCGGTTTGTTCCGCCTACTTCCACAACTCGGCCAGATCAAAGGGGGTACGGGAATACATCAACT GCCGGAGTGGGATGCCGTGCCACCTTCACCCCAGCAGCGCTCTATACGGTATGGGTTGCACTCCCGAGTACGTTGTCTAT CACGAGTTGGTCCTGACCTCGAAGGAGTACATGCAGTGTACCACAGCAGTGGAGCCCCAGTGGCTGGCCGAACTGGGACC CATGTTTTTCTCTATTAAGGAGTCTGATACATCGTTACTGGAACACAAGAAGAAACAAAATCAGGAGAAAACAAGCATGG AGGAGGAGATGGAGAATTTGGAGAAGGTACAAGCAGAGGTTGAGAGAAAAAGGAAACAGAAGGAGAAGGAAAAGATGGCT CAGCATCAGCAGCAAATTTCCATGCCAGGTTTAAGAAAGAATTCTTCCACATACATGAGACCAAAGAAGCTTGGTTTGTA A
Protein sequence (LotjaGi6g1v0013100.6) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTETMLMFGGGGGEDRVKFVARKRKVREDVVGRRSSVYDAVVAKKKLSHWEDRQLINSGVVRRGIQTCEFDDDEEEHTKV TLLVHDTKPPFLDGRLVFTKQADPIMPIKDPTSDMAIISCKGSNLVRKIHEKQSMDKSRKHFWELAGSKLGDILGVEKTA EEMDAVGQDGKIDLPKFSQHLNKREEAVSEFAKSKSMSEQRQYLPIFSVREELLQVIRENQVVVVVGETGSGKSTQLAQY LHEDGYTVGGGIVGCTQPRRVAAMSVAKRVSEEMETELGDQVGYAIRFEDVTGPNTIIKYMTDGVLLRETLKDSDLDKYR VIVMDEAHERSLNTDVLFGILKKVVAQRRDFKLIVTSATLNAQKFSNFFGSAPVFHIPGRTFDVNTIWSKTPCEDYVEGA VKQAMTIHLTSPPGDILIFMTGQDDIEAACYALAERMDQIMVSSSSSKKQVPKLLILPIYSQLPADLQAKIFQKAEDGAR KCIVATNIAETSLTVDGIHYVIDTGYGKMKVYNPRLGMDALQVFPVSRAAADQRAGRAGRTGPGTCYRLYTESAYLNEML PSPVPEIQRANLSNVILLLKSLRVEDVLDFDFMDPPPRDNILNSMYQLWVLGALNNVGGLTDLGWKMVEFPLDPPLAKML LMGEKLGCLEEVLTIVSMLSVPSVFFRPKDRAEESDAARERFSVPESDHLTLYNVYQQWKQHDYRGDWCNDHFLHVKGLR KAREVRSQLLDILKKLNIPLTTCFPDTDIVRKAVCSAYFHNSARSKGVREYINCRSGMPCHLHPSSALYGMGCTPEYVVY HELVLTSKEYMQCTTAVEPQWLAELGPMFFSIKESDTSLLEHKKKQNQEKTSMEEEMENLEKVQAEVERKRKQKEKEKMA QHQQQISMPGLRKNSSTYMRPKKLGL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 146 | 855 | 710 | 8.7E-280 | – | |
| PANTHER | 146 | 855 | 710 | 8.7E-280 | – | |
| Gene3D | 158 | 380 | 223 | 3.7E-88 | – | |
| SUPERFAMILY | 195 | 753 | 559 | 2.74E-127 | ||
| SMART | 202 | 387 | 186 | 3.1E-31 | ||
| CDD | 204 | 377 | 174 | 3.48593E-114 | – | |
| Pfam | 209 | 364 | 156 | 2.1E-7 | ||
| ProSiteProfiles | 214 | 378 | 165 | 18.84 | ||
| Gene3D | 381 | 561 | 181 | 1.7E-66 | – | |
| CDD | 392 | 550 | 159 | 2.81279E-72 | – | |
| ProSiteProfiles | 400 | 583 | 184 | 16.639 | ||
| Pfam | 408 | 542 | 135 | 2.4E-13 | ||
| SMART | 438 | 542 | 105 | 4.7E-17 | ||
| Gene3D | 585 | 694 | 110 | 2.0E-29 | – | |
| SMART | 603 | 693 | 91 | 8.0E-35 | ||
| Pfam | 606 | 692 | 87 | 4.6E-22 | ||
| Pfam | 750 | 827 | 78 | 4.4E-16 | ||
| MobiDBLite | 843 | 881 | 39 | - | – | |
| Coils | 843 | 885 | 43 | - | – | |
| MobiDBLite | 843 | 906 | 64 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | Helicase activity | Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi6g1v0013100.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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