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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0019300 |
| Transcript ID | LotjaGi3g1v0019300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transducin/WD40 repeat protein; TAIR: AT2G26490.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|O48716|JGB_ARATH Protein JINGUBANG; TrEMBL-Plants: tr|A0A0B2NTE5|A0A0B2NTE5_GLYSO Putative WD repeat-containing protein; Found in the gene: LotjaGi3g1v0019300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:2023432..2024841) extracted from Lotus japonicus Gifu genome v1.2.
ATGAAGCATAAGGGGCTGATCACATCAATGGCAATTAACACAGCAGAGGACATTCTATACACAGCTTCCCTAGACAAGAC AGTGAAAGTGTGGCGAATCTCAGACCTGAAGTGCACAGAGACAATCAAAGCTCACACTGAGCCAATCAATGCCATCATAG CAGCAGATGATGGAGTTCTCTACACTGCCTCAGATGATGCCACAGTTAGAGTTTGGCGCAGAAACTTCTGCAGCCATGAC CAACCACACTCACTTACAGTGACCCTGCATGCCAAATATTCTCCTGTGAAGGCCTTGACACTGACCCCAGATGGAGGAGG GGTTTTGTATGGTGGGTGCAGTGATGGGTACATACACTACTGGCTAAAGGGTTGGTTTGCAGGTACAGGTTGATAGGAAA TGAGGCATTTGTTTCTTGAATAGAAATTTTTTGTTTAGTAAAATAGTATTTAAGTGTGTCTGTGTCTGGAACCTCACAAT CAATTCTGTCTGAGTAAAACCATTTTCGGATAACAATTGGTTGAAAGTTATCTAGAAAATTAAATGCATATGTTTATATA TACAACAGAAAACATGATAAATCTAAAATCACATTTAACATGATTTAAATAACTTTCTTTAACTTTTGCAACTGACCATC ATGATTTTGGGTTCATTGTGATTTTTTAACGTGTATCTAAACATGTTGGTTCACTCCTAACAATTTTGATAGAAGTTAGA AAGAGTAACTTATGAGTTGAATACAATCAATTATACAAGAGAATTTTATAATATTACTTTCCAAAGTCACATTTTCCATA AATATATTCAAACACAAATTATTCTATTCCCAGCTCACATTTATCGTAATCAATTTTAAAAAGAACAAATTTATTCAAAA TCATTTGTCACAACACTGAATCACTGATCAAACACACTAAATATTATATTTGACCCTAAAAAAAAATTATACTGCTAAAA ATTTATATTGTTTTCTCCAACTAATTACTATTAATTTTGATTAATATGTTAAAACTGCACCCCTTTACTAATTTTTTCAG TTTCCATTTTGCAGGCCAATTGCAATATGGTGGGTCAATCCAAGGGCACACACATGCAGTGATGTGCCTAGCTAGCGTGT CAAGGTTTGTGGTTAGTGGGTCAGCTGATTCAACAAGCAGGGTTTGGGGTAGAGAACAAGATGGGCAACACACATGTCTA GCAGTTCTTGTTGGTCACAGAGGGCCTATTAGGTGTGTGTCAGCTTTCATAGGAGGAACTAGGTTGGTGGAAGATAATGA AGATAGTTGCACTGTTTGCACTGGAAGCCTTGATGGGGTCCTGAAGCTTTGGCGTGTCTCACATACCAATAATCAGTGCT CATCCCAAGCAGGGGTCAAGTACTTTGAACACTACAAGGGGCTTCAATGA
CDS sequence (LotjaGi3g1v0019300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGCATAAGGGGCTGATCACATCAATGGCAATTAACACAGCAGAGGACATTCTATACACAGCTTCCCTAGACAAGAC AGTGAAAGTGTGGCGAATCTCAGACCTGAAGTGCACAGAGACAATCAAAGCTCACACTGAGCCAATCAATGCCATCATAG CAGCAGATGATGGAGTTCTCTACACTGCCTCAGATGATGCCACAGTTAGAGTTTGGCGCAGAAACTTCTGCAGCCATGAC CAACCACACTCACTTACAGTGACCCTGCATGCCAAATATTCTCCTGTGAAGGCCTTGACACTGACCCCAGATGGAGGAGG GGTTTTGTATGGTGGGTGCAGTGATGGGTACATACACTACTGGCTAAAGGGTTGGTTTGCAGGCCAATTGCAATATGGTG GGTCAATCCAAGGGCACACACATGCAGTGATGTGCCTAGCTAGCGTGTCAAGGTTTGTGGTTAGTGGGTCAGCTGATTCA ACAAGCAGGGTTTGGGGTAGAGAACAAGATGGGCAACACACATGTCTAGCAGTTCTTGTTGGTCACAGAGGGCCTATTAG GTGTGTGTCAGCTTTCATAGGAGGAACTAGGTTGGTGGAAGATAATGAAGATAGTTGCACTGTTTGCACTGGAAGCCTTG ATGGGGTCCTGAAGCTTTGGCGTGTCTCACATACCAATAATCAGTGCTCATCCCAAGCAGGGGTCAAGTACTTTGAACAC TACAAGGGGCTTCAATGA
Protein sequence (LotjaGi3g1v0019300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKHKGLITSMAINTAEDILYTASLDKTVKVWRISDLKCTETIKAHTEPINAIIAADDGVLYTASDDATVRVWRRNFCSHD QPHSLTVTLHAKYSPVKALTLTPDGGGVLYGGCSDGYIHYWLKGWFAGQLQYGGSIQGHTHAVMCLASVSRFVVSGSADS TSRVWGREQDGQHTCLAVLVGHRGPIRCVSAFIGGTRLVEDNEDSCTVCTGSLDGVLKLWRVSHTNNQCSSQAGVKYFEH YKGLQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 228 | 228 | 2.2E-128 | – | |
| PANTHER | 1 | 228 | 228 | 2.2E-128 | – | |
| ProSiteProfiles | 1 | 230 | 230 | 23.071 | ||
| Gene3D | 1 | 123 | 123 | 2.1E-23 | ||
| ProSiteProfiles | 1 | 41 | 41 | 11.979 | ||
| SUPERFAMILY | 3 | 224 | 222 | 4.4E-37 | ||
| SMART | 3 | 32 | 30 | 9.0 | ||
| Pfam | 8 | 75 | 68 | 8.2E-6 | – | |
| PRINTS | 19 | 33 | 15 | 1.7E-5 | ||
| SMART | 35 | 73 | 39 | 3.2E-6 | ||
| ProSiteProfiles | 42 | 72 | 31 | 10.007 | ||
| SMART | 82 | 122 | 41 | 0.6 | ||
| SMART | 129 | 166 | 38 | 0.15 | ||
| Gene3D | 131 | 243 | 113 | 4.6E-15 | ||
| Pfam | 134 | 165 | 32 | 0.05 | ||
| ProSiteProfiles | 136 | 165 | 30 | 9.406 | ||
| PRINTS | 153 | 167 | 15 | 1.7E-5 | ||
| SMART | 172 | 221 | 50 | 0.0022 | ||
| Pfam | 174 | 220 | 47 | 4.5E-4 | ||
| PRINTS | 208 | 222 | 15 | 1.7E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0019300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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