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GO:0000162

View this GO term in other databases

Overview

Field Value
Namespace Biological process
Short description Tryptophan biosynthetic process
Full defintion The chemical reactions and pathways resulting in the formation of tryptophan, the chiral amino acid 2-amino-3-(1H-indol-3-yl)propanoic acid; tryptophan is synthesized from chorismate via anthranilate.
Subterm of

Relationships

The relationship of GO:0000162 with other GO terms.

Relationship type GO terms
Is a
Regulates n.a.
Part of n.a.
Positively regulates n.a.
Negatively regulates n.a.

Ancestor tree

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Additional data

This table contains additional metadata associated with the GO entry's definition field.

Field Value
GOCmah
ISBN
Biochemical PathwaysBiochemical Pathways

Gerhard Michal · ISBN: 0471331309

Wiley-Spektrum, 1999 · 296 pages

Biochemical Pathways An Atlas of Biochemistry and Molecular Biology Edited by Gerhard Michal Modern biochemistry is a complex field, combining areas of cell biology, molecular biology, medicine, immunology, genetics-even neuroscience. Many of these disciplines converge in the dynamic arena of research dealing with metabolic processes and other mechanisms present at the cellular and molecular level. Biochemical Pathways offers a truly unique road map to modern biochemistry. In full and vivid color, it features detailed charts-each color-coded and accompanied by a brief explanation-of metabolic pathways and their relationship to regulation pathways. Important mechanisms of molecular biology are reviewed in the second part of the book. This encyclopedic compendium goes well beyond traditional biochemistry to cover some very specialized pathways and many aspects of regulation. The clear, systematic presentation includes: * Metabolic structures and reaction mechanisms * The intermediates and enzymes involved * Metabolic branching points * Transcription and translation * Signal transduction * Transport mechanisms * Blood coagulation, immunology, and the complement system Current, referenced, and easy-to-use, Biochemical Pathways is bound to become a classic in the field. It is a one-of-a-kind visual guide for researchers and scholars in all areas of the life sciences.

MetaCycTRPSYN-PWY

Associated Lotus transcripts 17

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Transcript Name Description GO terms GO count
Lj0g3v0094309.1
– PREDICTED: anthranilate synthase component I-1, chloroplastic-like [Glycine max] gi|356569313|ref|XP_003552847.1|
GO terms
2
Lj0g3v0362709.1
– PREDICTED: tryptophan synthase beta chain 2, chloroplastic-like [Cicer arietinum] gi|502128685|ref|XP_004500046.1|
GO terms
2
Lj1g3v0395770.1
– Anthranilate phosphoribosyltransferase [Medicago truncatula] gi|357461927|ref|XP_003601245.1|
GO terms
2
Lj3g3v2780540.1
– PREDICTED: LOW QUALITY PROTEIN: tryptophan synthase beta chain 2-like [Cicer arietinum] gi|502148742|ref|XP_004507251.1|
GO terms
3
Lj5g3v2258610.1
– PREDICTED: anthranilate synthase component I-2, chloroplastic-like [Cicer arietinum] gi|502121245|ref|XP_004497238.1|
GO terms
2
Lj6g3v0896480.1
– PREDICTED: tryptophan synthase beta chain 2, chloroplastic-like [Glycine max] gi|356567382|ref|XP_003551899.1|
GO terms
2
LotjaGi1g1v0178700.1
– Anthranilate phosphoribosyltransferase; TAIR: AT5G17990.1 tryptophan biosynthesis 1; Swiss-Prot: sp|Q02166|TRPD_ARATH Anthranilate phosphoribosyltransferase, chloroplastic; TrEMBL-Plants: tr|I3SIF7|I3SIF7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0178700
GO terms
2
LotjaGi2g1v0059100.1
– Tryptophan synthase beta chain; TAIR: AT5G38530.1 tryptophan synthase beta type 2; Swiss-Prot: sp|Q8Q001|TRPB2_METMA Tryptophan synthase beta chain 2; TrEMBL-Plants: tr|A0A072U669|A0A072U669_MEDTR Tryptophan synthase beta chain; Found in the gene: LotjaGi2g1v0059100
GO terms
3
LotjaGi2g1v0059100.2
– Tryptophan synthase beta chain; TAIR: AT5G38530.1 tryptophan synthase beta type 2; Swiss-Prot: sp|Q8Q001|TRPB2_METMA Tryptophan synthase beta chain 2; TrEMBL-Plants: tr|A0A072U669|A0A072U669_MEDTR Tryptophan synthase beta chain; Found in the gene: LotjaGi2g1v0059100
GO terms
3
LotjaGi2g1v0457700.1
– Tryptophan synthase, beta chain; TAIR: AT5G28237.1 Pyridoxal-5'-phosphate-dependent enzyme family protein; Swiss-Prot: sp|O50046|TRPB_CAMAC Tryptophan synthase beta chain 2, chloroplastic; TrEMBL-Plants: tr|A0A0S3T6G8|A0A0S3T6G8_PHAAN Tryptophan synthase; Found in the gene: LotjaGi2g1v0457700
GO terms
2
LotjaGi5g1v0353000.1
– Anthranilate synthase; TAIR: AT2G29690.1 anthranilate synthase 2; Swiss-Prot: sp|P32069|TRPX_ARATH Anthranilate synthase alpha subunit 2, chloroplastic; TrEMBL-Plants: tr|V7BE65|V7BE65_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0353000
GO terms
2
LotjaGi5g1v0353000.2
– Anthranilate synthase; TAIR: AT2G29690.1 anthranilate synthase 2; Swiss-Prot: sp|P32069|TRPX_ARATH Anthranilate synthase alpha subunit 2, chloroplastic; TrEMBL-Plants: tr|V7BE65|V7BE65_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0353000
GO terms
2
LotjaGi6g1v0072100.1
– Anthranilate synthase; TAIR: AT5G05730.1 anthranilate synthase alpha subunit 1; Swiss-Prot: sp|P32068|TRPE_ARATH Anthranilate synthase alpha subunit 1, chloroplastic; TrEMBL-Plants: tr|A0A0B2RX49|A0A0B2RX49_GLYSO Anthranilate synthase component I-1, chloroplastic; Found in the gene: LotjaGi6g1v0072100
GO terms
2
LotjaGi6g1v0072100.2
– Anthranilate synthase; TAIR: AT5G05730.1 anthranilate synthase alpha subunit 1; Swiss-Prot: sp|P32068|TRPE_ARATH Anthranilate synthase alpha subunit 1, chloroplastic; TrEMBL-Plants: tr|A0A0B2RX49|A0A0B2RX49_GLYSO Anthranilate synthase component I-1, chloroplastic; Found in the gene: LotjaGi6g1v0072100
GO terms
2
LotjaGi6g1v0162700.1
– Tryptophan synthase beta chain; TAIR: AT4G27070.1 tryptophan synthase beta-subunit 2; Swiss-Prot: sp|P25269|TRBP2_ARATH Tryptophan synthase beta chain 2, chloroplastic; TrEMBL-Plants: tr|I1N0T6|I1N0T6_SOYBN Tryptophan synthase; Found in the gene: LotjaGi6g1v0162700
GO terms
2
LotjaGi6g1v0166000.2
– Tryptophan synthase beta chain; TAIR: AT4G27070.1 tryptophan synthase beta-subunit 2; Swiss-Prot: sp|O50046|TRPB_CAMAC Tryptophan synthase beta chain 2, chloroplastic; TrEMBL-Plants: tr|I3S5I7|I3S5I7_LOTJA Tryptophan synthase; Found in the gene: LotjaGi6g1v0166000
GO terms
2
LotjaGi6g1v0166000.3
– Tryptophan synthase beta chain; TAIR: AT4G27070.1 tryptophan synthase beta-subunit 2; Swiss-Prot: sp|O50046|TRPB_CAMAC Tryptophan synthase beta chain 2, chloroplastic; TrEMBL-Plants: tr|I3S5I7|I3S5I7_LOTJA Tryptophan synthase; Found in the gene: LotjaGi6g1v0166000
GO terms
2

Co-occuring GO terms 1

A list of co-occurring GO terms within the L. japonicus gene space:

GO term Namespace Name Observations Saturation (%)
GO:0004834
Molecular function Tryptophan synthase activity 1 5.88