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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0166000 |
| Transcript ID | LotjaGi6g1v0166000.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Tryptophan synthase beta chain; TAIR: AT4G27070.1 tryptophan synthase beta-subunit 2; Swiss-Prot: sp|O50046|TRPB_CAMAC Tryptophan synthase beta chain 2, chloroplastic; TrEMBL-Plants: tr|I3S5I7|I3S5I7_LOTJA Tryptophan synthase; Found in the gene: LotjaGi6g1v0166000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:45016643..45019819) extracted from Lotus japonicus Gifu genome v1.2.
ATAAAAACCTTCTTGATCCTCCTCCAGCAGCAAAACTCATCTCCTTCACAAACAACCATAACCCTTTGTAAGTTTGAATT CATCAAATTTTGCAACTTTTCCCTTTTCTTCTCCATTCATTCTCAACTCAATCAAGCATTCACATTCAGCACTGTTCTTT CTTCCAAATGGAGGACCGCACCAAACAAGACAGTGAAGAAACCAATGGCAGTTCTGTCCTATCTCACCGACCCGATTCAT TTGGCCGGTATGGTCGGTTTGGTGGCAAGTATGTCCCTGAAACTCTCATGCATGCAATCACTGAGCTAGAGGCAGCGTTC CATTCCCTTGCTCATGATGAAGCCTTCCAGGTTCTGTTTTTTTCACCATTTTCACCTTTTTCTGTTGTTTTTGTTACCTT TGAATCCCAAAACCCACTTGGGATTTTCAGTTTTTGTGAAGAAAATTCAAATGGGTATCTTCAGGGACTAATAAAGTTTC TAAATTTTGCAGAAAGAGCTTGGTGGGATACTGAGGGACTATGTGGGTAGGGAGAGCCCACTTTACTTTGCTGAGAGACT GACTGAGCACTACAGGCGTGGTGATGGGGAAGGGCCTCATGTGTATCTGAAGAGGGAGGATCTCAACCACACTGGTGCTC ATAAGATTAATAATGCTGTTGCTCAGGCTTTGCTTGCCAAGAGGTTGGGGAAGAAGAGGGTTATTGCTGAGACTGGTGCT GGGCAGCATGGAGTTGCTACTGCCACTGTGTGTGCTCGGTTCGGGTTGGAATGTGTTGTTTATATGGGTGCTCAGGATAT GGAAAGGCAGTCCCTTAATGTTTTCAGAATGCGTCTACTTGGTGCTGAGGTATCTTGCCCTTATTGTACTTGTGGTTGGT GTTTTGTTTTATTAGGATGGTACATTCTGTATAGTAGTATCTTGGGAGAATGAAGATTTATGAGAAATTGCTCATTTGTT AGTCAATCCTATTCCTAGTAATTGTTCATGTGAATTGTTGTTTAATTGGCTAATCCTAATTGCTTTCAAGGATCAGCGGT TGGTAACTTGGTATTCTTGACTAACTTTAATGTATTAACATTGGAATAAGACATGGGAAAAAGGCATCTTATTGGAAATG CAGGGTGTATCCATTGCTAGATGTTGACTTTAAAATATCTGTTTGACCATTTTAATAATTTTTTTGTAGAGCCAATGGCT TTGTTTGATTCATGTAGTTGAACTTACATAGTGGGATAAGACTTGGTGGTTTTTGTCTGACAAGTTTATCAATATGCCTT TTTCGCTGGGCTTGATAATTAGGTAATTTTGTGATTTAGGTGAGAGCAGTACATTCTGGGACTGCTACGCTGAAGGATGC TACGTCAGAAGCTATAAGGGATTGGGTGACTAATGTGGAGACAACACATTATATTTTGGGTTCGGTTGCGGGACCACATC CGTATCCTATGATGGTAAGAGAGTTTCAAGCCGTGATTGGCAAAGAAACAAGAAAGCAAGCATTGGAGAAATGGGGAGGG AAGCCAGATATTCTGGTAGCATGTGTTGGTGGTGGTTCGAATGCGATGGGACTTTTCCATGAATTTATCGATGACAAAGA TGTTAGGCTGATTGGAGTGGAGGCTGCTGGGTTGGGCCTAGAAAGCGGTAAGCATGCCGCTACATTAACAAAAGGAGAGA TCGGAGTTTTGCATGGAGCAATGAGCTATCTTTTGCAAGATGATGATGGGCAAATAATTGAGCCTCACTCTATTAGTGCA GGGTAATTCTTCTGATTGATATTTGGTTACCCTTTTTCTTGTGTCTATCCAGATTATGTCCGTTCCAGTTTTCATTTCTT GTTTTCATGGTGCAGGTTGGACTACCCTGGGGTTGGACCAGAGCATAGCTTCTTGAAAGATGTAGGGCGGGCTGAATACT ACAGTGTTACTGATGAAGAAGCACTAGAAGGTAGTACTGCTTTATCTCTATTGCTTTGCCAAATGTATAATGATATCTTT GTTAGAAATGGATTGAATTTTAGTTTTCATTGGTTGTTTAATTATTTATGCTTTTCTTTGTTCTTGTGTCACTTGACATT CCCTCCGTAAATCCCTAACTACATTAAGGATGTAACTGAAACATGTGAAATGGAGAGAAGCAAGAACTATAATAATGAAG TGGCTTGAAGTCGGAGAATTTTTTTTTATAACTAGTGGTACTGACTACTTATACAGGATGCAACTATTTTCCACCTTAAT TATAGATGGTAGTACATGTTGGTGGTAGTTGTGGTTATGAATCAGAATTCCATGTTCAATGTCCATTTTGTTTTGCTCTT AAAGTTAGAATTGACTGTCAACACTCAATCCAAAGCATGGCATCCCCAAAAGATACATTTTGGAGCTTCTCCGTCAACGT GGTTATGGAGTTCCTAACCACAACACCAAATAAGTAGTTAATTTGTTGTTCATGGCAACCCCAAAAGATACATTTTGTAG CTTCTCCCTCAACGTGGTTATGGTGTTCCTAACCACAACACCAAATAAGTGGTTAATCTGTTGTTTCCTTTCTTGCTTCA TTTGCTATATATTTAGCATTTTGACCCATTTACAATACTGCTGCAATTTGAGAAGATATCTTGCTATGATATTATTAGCT CATTTTTACCTTGACATTAATTTATTGTTTCAGAACTTTTGAGTGACTAAAATTTTAAGTATGAACACCTTAATACCTTA TTGTAGTCATCTGTTCGAAAATAAGACTAAGGTTTCTGGAAAAAAATCTTGAGATCAAGTTTTACCTTGTTGGCCACTAT ATGACACAAGACCTTGTCACTTCATGCAGTTTAAAAATAACAATATCTCAATAATTGTCATAGGCAGCATTCCATTTATC AAGTAAAGAAACTGTCAGTGACATATATTCTTTCTTTGTTCTAAGGTTAGAAGTTGAAGTTGCTTTTTATATGCTGTATC ATGTATCTTTATCTCATATTCAAGTGCTTTTGTATCTGCAGCTTTTAAAAGACTGTCCCAGCTGGAAGGCATAATTCCAG CTTTGGAGACATCTCATGCTTTGGCTTATTTAGAGAAGCTCTGTCCTACCCTTCCGAATGGAACTAAGGTTGTGGTTAAC TGCAGTGGCAGAGGGGATAAGGATGTTCAAACTGCTTCCAAGTACTTCAATGTTTGA
CDS sequence (LotjaGi6g1v0166000.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGACCGCACCAAACAAGACAGTGAAGAAACCAATGGCAGTTCTGTCCTATCTCACCGACCCGATTCATTTGGCCG GTATGGTCGGTTTGGTGGCAAGTATGTCCCTGAAACTCTCATGCATGCAATCACTGAGCTAGAGGCAGCGTTCCATTCCC TTGCTCATGATGAAGCCTTCCAGAAAGAGCTTGGTGGGATACTGAGGGACTATGTGGGTAGGGAGAGCCCACTTTACTTT GCTGAGAGACTGACTGAGCACTACAGGCGTGGTGATGGGGAAGGGCCTCATGTGTATCTGAAGAGGGAGGATCTCAACCA CACTGGTGCTCATAAGATTAATAATGCTGTTGCTCAGGCTTTGCTTGCCAAGAGGTTGGGGAAGAAGAGGGTTATTGCTG AGACTGGTGCTGGGCAGCATGGAGTTGCTACTGCCACTGTGTGTGCTCGGTTCGGGTTGGAATGTGTTGTTTATATGGGT GCTCAGGATATGGAAAGGCAGTCCCTTAATGTTTTCAGAATGCGTCTACTTGGTGCTGAGGTGAGAGCAGTACATTCTGG GACTGCTACGCTGAAGGATGCTACGTCAGAAGCTATAAGGGATTGGGTGACTAATGTGGAGACAACACATTATATTTTGG GTTCGGTTGCGGGACCACATCCGTATCCTATGATGGTAAGAGAGTTTCAAGCCGTGATTGGCAAAGAAACAAGAAAGCAA GCATTGGAGAAATGGGGAGGGAAGCCAGATATTCTGGTAGCATGTGTTGGTGGTGGTTCGAATGCGATGGGACTTTTCCA TGAATTTATCGATGACAAAGATGTTAGGCTGATTGGAGTGGAGGCTGCTGGGTTGGGCCTAGAAAGCGGTAAGCATGCCG CTACATTAACAAAAGGAGAGATCGGAGTTTTGCATGGAGCAATGAGCTATCTTTTGCAAGATGATGATGGGCAAATAATT GAGCCTCACTCTATTAGTGCAGGGTTGGACTACCCTGGGGTTGGACCAGAGCATAGCTTCTTGAAAGATGTAGGGCGGGC TGAATACTACAGTGTTACTGATGAAGAAGCACTAGAAGCTTTTAAAAGACTGTCCCAGCTGGAAGGCATAATTCCAGCTT TGGAGACATCTCATGCTTTGGCTTATTTAGAGAAGCTCTGTCCTACCCTTCCGAATGGAACTAAGGTTGTGGTTAACTGC AGTGGCAGAGGGGATAAGGATGTTCAAACTGCTTCCAAGTACTTCAATGTTTGA
Protein sequence (LotjaGi6g1v0166000.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEDRTKQDSEETNGSSVLSHRPDSFGRYGRFGGKYVPETLMHAITELEAAFHSLAHDEAFQKELGGILRDYVGRESPLYF AERLTEHYRRGDGEGPHVYLKREDLNHTGAHKINNAVAQALLAKRLGKKRVIAETGAGQHGVATATVCARFGLECVVYMG AQDMERQSLNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVREFQAVIGKETRKQ ALEKWGGKPDILVACVGGGSNAMGLFHEFIDDKDVRLIGVEAAGLGLESGKHAATLTKGEIGVLHGAMSYLLQDDDGQII EPHSISAGLDYPGVGPEHSFLKDVGRAEYYSVTDEEALEAFKRLSQLEGIIPALETSHALAYLEKLCPTLPNGTKVVVNC SGRGDKDVQTASKYFNV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 21 | 21 | - | – | |
| PANTHER | 5 | 416 | 412 | 5.8E-273 | – | |
| PANTHER | 5 | 416 | 412 | 5.8E-273 | ||
| PIRSF | 6 | 417 | 412 | 5.6E-165 | ||
| Hamap | 21 | 415 | 395 | 53.078 | ||
| SUPERFAMILY | 22 | 414 | 393 | 1.31E-149 | ||
| TIGRFAM | 26 | 414 | 389 | 1.1E-188 | ||
| Gene3D | 29 | 230 | 202 | 2.9E-188 | ||
| CDD | 43 | 410 | 368 | 0.0 | ||
| Pfam | 73 | 402 | 330 | 2.4E-49 | ||
| Gene3D | 73 | 408 | 336 | 2.9E-188 | ||
| ProSitePatterns | 105 | 119 | 15 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Tryptophan biosynthetic process | The chemical reactions and pathways resulting in the formation of tryptophan, the chiral amino acid 2-amino-3-(1H-indol-3-yl)propanoic acid; tryptophan is synthesized from chorismate via anthranilate. | ||
| Molecular function | Tryptophan synthase activity | Catalysis of the reaction: L-serine + (1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O. | ||
| Biological process | Tryptophan metabolic process | The chemical reactions and pathways involving tryptophan, the chiral amino acid 2-amino-3-(1H-indol-3-yl)propanoic acid. |
Expression pattern of LotjaGi6g1v0166000.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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