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GO:0005968

Overview

Field Value
Namespace Cellular component
Short description Rab-protein geranylgeranyltransferase complex
Full defintion A heterodimeric enzyme complex, which in mammals is composed of an alpha and a beta subunit, and which associates with an accessory protein Rep (Rab escort protein). Catalyzes of the transfer of a geranyl-geranyl group from geranylgeranyl pyrophosphate to a Rab protein.
Subterm of

Relationships

The relationship of GO:0005968 with other GO terms.

Relationship type GO terms
Is a
Regulates n.a.
Part of n.a.
Positively regulates n.a.
Negatively regulates n.a.

Ancestor tree

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Additional data

This table contains additional metadata associated with the GO entry's definition field.

Field Value
GOCjl
PMID
Crystallization and preliminary X-ray diffraction analysis of the Rab escort protein-1 in complex with Rab geranylgeranyltransferase.
J Struct Biol. ; 136 (2): 158–61.PMID: 11886217

Posttranslational prenylation of proteins is a widespread phenomenon and the majority of prenylated proteins are geranylgeranylated members of the Rab GTPase family. Geranylgeranylation is catalyzed by Rab geranylgeranyltransferase (RabGGTase) and is critical for the ability of Rab protein to mediate vesicular docking and fusion of various intracellular vesicles. RabGGTase consists of a catalytic alpha/beta heterodimer and an accessory protein termed Rab escort protein (REP-1) that delivers the newly prenylated Rab proteins to their target membrane. Mutations in the REP-1 gene in humans lead to an X-chromosome-linked defect known as choroideremia--a debilitating disease that inevitably culminates in complete blindness. Here we report in vitro assembly and purification of the stoichiometric ternary complex of RabGGTase with REP-1 stabilized by a hydrolysis-resistant phosphoisoprenoid analog--farnesyl phosphonyl(methyl)phoshonate. The complex formed crystals of extended plate morphology under low ionic-strength conditions. X-ray diffraction data were collected to 2.8 A resolution at the ESRF. The crystals belong to the monoclinic space group P2(1), with unit-cell parameters a = 68.7, b = 197.7, c = 86.1 A, beta = 113.4 degrees. Preliminary structural analysis revealed the presence of one molecule in the asymmetric unit.

Associated Lotus transcripts 3

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Transcript Name Description GO terms GO count
Geranylgeranyl transferase type-2 subunit alpha [Medicago truncatula] gi|357465223|ref|XP_003602893.1| 2
Geranylgeranyl transferase type-2 subunit alpha 1; TAIR: AT4G24490.1 RAB geranylgeranyl transferase alpha subunit 1; Swiss-Prot: sp|Q8VYB7|PGTA1_ARATH Geranylgeranyl transferase type-2 subunit alpha 1; TrEMBL-Plants: tr|A0A0B2PII6|A0A0B2PII6_GLYSO Geranylgeranyl transferase type-2 subunit alpha; Found in the gene: LotjaGi1g1v0345500 2
Guanosine nucleotide diphosphate dissociation inhibitor; TAIR: AT3G06540.1 Rab escort protein; Swiss-Prot: sp|Q8LLD4|REP_ARATH Rab escort protein 1; TrEMBL-Plants: tr|I1J8C9|I1J8C9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0355200 3

Co-occuring GO terms 1

A list of co-occurring GO terms within the L. japonicus gene space:

GO term Namespace Name Observations Saturation (%)
Biological process Protein geranylgeranylation 1 33.33