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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0355200 |
| Transcript ID | LotjaGi2g1v0355200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Guanosine nucleotide diphosphate dissociation inhibitor; TAIR: AT3G06540.1 Rab escort protein; Swiss-Prot: sp|Q8LLD4|REP_ARATH Rab escort protein 1; TrEMBL-Plants: tr|I1J8C9|I1J8C9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0355200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:83138929..83144775) extracted from Lotus japonicus Gifu genome v1.2.
CTAAAATAAAATGAGGCCCAAATAGAGAACACGCTATGAGCTCTCCCGTTGCCGCTGAAACGACAACGTTTCCTTCAAAC GCTCTCCAATTCGCTACCTGTTTTTGCACGCCATAGACGACGGCGAATAACTCGCACGCGCCGTCGTCGCCGCCATGGGC CAAGACGAAGAAGCCTTGTCTTACCCTCCGATTGACCCGGTGAACTACGATCTCATCATCGTCGGCACAGGCCTATCGGA ATCCATCATCGCTGCAGCCGCTTCCGCCGTCGGAAAGACAGTCCTGCACCTCGACCCCAACTCCTTCTACGGCAGCCACT TCGCTTCTCTCTCCATCGACGAATTCACCTCTTACCTCAACTCCCCTCCCACATCCATCCCCACCGCCGCCGCATCTGGC GATTCCGATTACGCCGTCGTGGACCTCGTCAGGCAACCACTATGCTCCGACGCGGAAATCGTTTCGCACGACGAAACCAC GTTTCTGCGAGAAAATTCGAGGAAATTCAATCTCGATTTGGGAGGGCCTAGGGCATTGTTCAGCGCGGATAAGACCATCG ATCTGTTGTTGAAGTCCGGTGCGGCGATGTACTTGGAGTTCAAAGGCATCGATGCGACGCTCGTCTACGAAGCGAATGGC GGATTGGTCGACGTGCCGGATTCTCGCGGCGCGATTTTCAGAGATAAGAACCTCTCGCTGAAGGAGAAGAACCAATTGAT GAGATTCTTCAAGCTCGTTCAGCAACACCTGGGTGATAATCAAGATGAGAAAATCTCGGAGGAAGATATGGAGAGTCCGT TTGTTAGTTTCTTGGAGAAAATGCGGTTGCCGCCGAAGATAAAATCGTATTGATCGTTTCCACTTGCTAGTGAGAATTGA TTTACAGTTCTATATGCCATTTTCTTTTTCTTCATAGCATTTTCTTTTACTGTGTTCTATCTTATCCATGTTCTCAGAAT CATGTACTATGCATGTTAGTCTTAAGATGAATGCATATCAGTGTTGTCAAATCGCGATGGCAGACCATCGCGGTGAGCCC AAAATCCCCATTTCGGTCGCTATTTAGCAGCGAATAGCGCGCTATAAGTGAAGTATGATGATTGGATAATAATCTTGAAA TGTTTGATAGTGGCTTTCCCTTAAACAGTTTGATTCGAAGTTAGTTATGTTTTTCTTTGAAAAGTGAAGTTTATCATCTT CTTGTGCAATGTGAAGAGCTAAGCTTATAAGTATGTGGTGCATATATAACCTGACCTGCAACAGTACACTAAGGTCATGC TTCTTTGTCTTCTACAGGTTTCTTTTGTATGCTATAGCTATGTTAGATTATGATCAAGAGAATAGTGAGGTTTGTAAGGA TGTATTTAAAACAAAGGATGGAATAGATCGTCTAGCACAATACAGCTCATCTGTTGGAAGGTAAGTTTTTATTCTTATTG TTTCATGTGTTACGTTGGCCTTGAGTTTTTATTTGACGGAACCCCTTTTTTCTAAACTTATCTTGGTTTTTCCAGGTATC CCAATGCACCAGGGGCTTTGCTTTATCCTACTTATGGTGAAGGAGAACTTCCACAAGCTTTTTGTCGCCGTGCTGCTGTC AAAGGTTGCATCCATGTAAGTTTCAAAGAATTTATAGACCATGTCTGAAAATTTATAATCACCTCAATTTCATTCTCATT GAACCTTGCCTATTTTTGTTTATACTAAACTTTAAAAAAGGTGGAAAACACTGTTCTATGCATTGATTATGTATGTTAAA AAGCCTTTTGTGTCTACCTATTTCTTCCATATTTACATTGTTGCATTTATGAATGCCTTCGTATCATATGTATATTAGAA ATTAGAAACATGATTCAGCAATCCTGTTGTCATGGAATTTGTTGTGTTTGACATGTCCTAGGTCTTTCTTTATGAAAGCT ACACTTAAAGTTAAAGGGATGAAATTCAGATATTGCTACATGGGGTCACAGGGATACTTATAATTATTATTATTATTATT ATTTACTGAAGCTGTTATCTATGTGCTGATTCCCATCTCTGTTCTGTTCATGTAATGTTAACATATAATCTTATTTACAT ATTAAACTTTGTGATTCAGGTTCTCAGAATGCCAGTCATTTCTCTGCTTATTGATAAGGTGATTTTTTTTTATCTTTTAT ATGGACTTTTGTAATACTTTTATGTGAAGATGAGTAGGATAGCCTCAAGTGCAAAATGAATTTCATCTTTGTCATTTTTA AACTGATGTTGCAGGTTACTGGGCTTTATAAAGGTGTTAGATTAGCTTCAGGTCAGGATTTATACAGCCATCAAATAATC CTAGACCCATGCTTTACAATTCCTTCCCCATTATCGTTATCTCCTGGAGATTTTCCCAGTGAAAGGCTCCAAATGTTGAG TCTGAGAGATATTAAAGGAATGGTCGCTAGGGGAATATGCATCACAAGGAATTCCATAAAGCCAGATGTATCTAATTGCT CGGTGGTGTGTCCTCCTAGATGTAAGAAGGATTTAAATACTGCACTTTGATACCCAGCGGCATATTCACTTGAGAAAGAA ATTCACTTTTTTTTTCTCTTTCCCTCTAGCATTGTATCCGGAACAGGTGACATCAATCAGAGCTCTTCAGTTAGGATCAA ATGTTGCTGTTTGTCCTGCGGGCACGTGAGTATTTTTACTAAATAAGCATCAGAACTCTCTTATTCTGCTGCTGATTTTT CTTTCAATTTCTTTTCTCCCCTACTCTAAATCTTGTATTTTTACTTCAACTTTGTTTCCTTTTCTAGTGTGGGTAAAAAA TTCGGGATGTCTTGCACTATTTTTGAATTTACGGGGTAACTCACATGTCAGATATATTTGAAAAGGGCTTTTGGTTGACC TTTTTATTTCTTAAAAGGGTTGTGATCATTAATGCTTATCACGTTTTCTTTCATGAGCCCATTTTTAGTTGATAGGCTAT GTAGAGTTTGTTATGCCCAGGTTGGCTAGAATGAGATGACATATTGGGACATGAGAGCAGGGAAATAGGTCTTTTTCTAA CCATCTCTATCTCAACATTGATGATGTTCAAGTTGTTAAATCTTTCCCTCACTCAAAGATTGTAATAACCAGCAATGGTG CTTACCTGAACTGTTAGACAATGATTGTGAAGATAATAACTCTCCTTCTCAGTGAGGGGGGCATTTTAAAATAAAGAAAA AGTGTACCATTTGATGCAATTTTTTTGTTAGGTGTGAGAAGTTTATCTGATGATATTTTTGAAATTCAATTGCCTATTCA GAAAAAAAATTGTTTTGCTTTTTTCCTGCAAATTTTCAGACTTCTTTTTCCTGTCATTGTCATATTTTGATTGTAGGCGT CAAGATGACAGTGACTCTATTGATTTACTTTTAGAGTTGTACTTACTTATGTTATCCTATGTCATTGCGGAGTGAACTAG TGAACTTAACTGACTATATTTGCCTTCTATTTGTCAGCTTTGTTTTATACTTTTCCACTTTGTGCAATGATGCCGATGAA GGAAAGAAGTTAATAAAAGCAGCCATGGATGCCCTTCTTACACTGCCCGGATGTGGAAACTCTGAAAACATTCCCATTGT TCAAAGTGATAGTGCAGATGTAAAACCCAATGTGCTCTGGAGTGCACTGTATATTCAGAAATTGACTACGGTGTGCTTCT AATCCTGTCCTGTTCTCAGATATCTTTTCTCCACAATTTTCACATTTACCTGCATATTGCTTGTGCATTTATCTCCTGCA TTATTTCATTTGCTGCATCAACGCTTGACTCATTTAAATGTTTTTTTCTCGTTTTTTGGTCATCATGGAGGTTATCCTCT CTCTCATGTTGAAACCTGAGAGTACGATAGTATAACCCCTATGGTCATATATCTTACATTCGTGAATATAGGCAGTGTTT TAAGAATTTTTTTATTCACATATGTGTTTCAAACATATGTAACACTGTTGTTGTGTTTTAAGAATTTTTTAATCAAAGAT GTGTTTCAAGCATATGTAATGTAACATTGACATGGATATCATCTTCTTGGTTTTTTTTTTGAAAAGATCTTCTTGGTTTT TGATGCATGTTATTTATATTTCAGAGTAAATTTGAATTTATCAGCTCCACTTCTACGCCGGATGGAAATCTAAACTACAA TGACATTTTAGATGCAACCGAGAAGGTATGTTTATGAGTTTTCAGTTCGGAATATAGCTCTCTGGATGTCTGTGAGTAAT TGTTACTGTTAAACAAGTAGTTAGACAGTGCGTTGATCCAAGGGAAAGGAATTGGTATTCATGTGCATTATAAATACATC ATATTGGGTTCAATCTAAGGATTCATGTGTATTAAAAAAATATCATTAGGAAGGGTCAGCCTTTGGCATCAGAGCATATT TGGGAGATTAGTTTCTTATTTATTAGGTGAGGCGATGCTCTTATAAACAACAGAATCAAACAGCAAGGCCCTTATTTTTG GATAAGTTGCTTGCAATTTTTGTTCATGAAAAGCAGGGAGCCCATATATATTTGGTCTTAAACCGAATTCTAAGATGGGA TATTTAAAAACTAATAAAAATAATTTATTAATATTATTGTAATGTCATTTGAAGTTTATCTTTACATCTTTTTGGATTTC AAAATTACTAATTTACTTATCGTAATTAATTTTTTTTAACATTTTTTTCTATCCATGATAAAGCTTATTATATTTATTTT TTATGAGAAATTACTTATTTCTTTAATGTAATTGAGAATGCCGATTATTGTATCATTTTTTACTTGTTGAATTTCTCTTG TGCCGTCAAGTATTTACTCTGACTCTGACAAAATGACTGTAAAGATTAGAAGCAATTTAGGATAGTTTATTAATAATTAG CTGTGTCACTGTTGCAGCTATTTGGTCAAATGTACCCCAATGAAGAATTCTTTCCACAGACAACATCACCTGAAGACAAC ACAGACGAAAATGGGGTAACTCTGGATGACTAACAATAGTAATTAAGGTCAAATTGGCATCTCATGCCAGAATTGCTGCA CCAAGATCTTGGAGCCGGAGGAACGAAGTTGTTACATAAAATACTCATGCCAGGATAAATTGACAATGGGGGTTAAAAAC TTAAATTTTGTATCAAGGAGTTGGAAGTTTACGAGTTACAAGTCATAATTTTTGTCCCCCCAAAGCAGGAAAAACATACT AGTTCTGGAAAGTTTTGTCAAGCATGCAAATACTGGTTTGGTGTTGTATACCCCTTTATGAGCGTTTGTTGGAAAAATTC ACCACTTAATGTGGAATAGTGGAAGTTTGAAAGCCACGGGACTGAAGTAACTCCTGTATCTTCATGTGTAATTTGTATTT TGAAAACAATGTGATTGTATAATATCTTGTTAGGTTACACAGATTTGAATCTGTCGCAATGGTATCCAAAGAAAAGACCT GAAACATTATAGGTTGTACCAACATTCCATTGCATCTTTCCTGAGTCGCACTGCACCATTAAATTCTTGAACATTCTTAG AACTTATTGATCAGATCATCCAGCTACTTTCTGGATCTTTCTTCACTCAAATTTTAGCCATTTTCTACCTACAGTCACGA TCTTCTTACCATTTTCTTTCTTCAATGTAAATGTTTGAAGGAAGAATATACGGTGCATGATCATTGGGATTCAATTCTAT CATCGTAAATTTTTCATCCATTTTTGTGTTATGATTCCCACAAGCGCTAAGCAATGTCCTCCATGCTGACTAACATCCGT TCTTTTGCACTATTTGGCAATGCTCAGATTCTTGGCTTAATCCTCATAAAGACCATGCCAAATAAGTCTGATCTACTTAA GAAATTC
CDS sequence (LotjaGi2g1v0355200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGCCAAGACGAAGAAGCCTTGTCTTACCCTCCGATTGACCCGGTGAACTACGATCTCATCATCGTCGGCACAGGCCT ATCGGAATCCATCATCGCTGCAGCCGCTTCCGCCGTCGGAAAGACAGTCCTGCACCTCGACCCCAACTCCTTCTACGGCA GCCACTTCGCTTCTCTCTCCATCGACGAATTCACCTCTTACCTCAACTCCCCTCCCACATCCATCCCCACCGCCGCCGCA TCTGGCGATTCCGATTACGCCGTCGTGGACCTCGTCAGGCAACCACTATGCTCCGACGCGGAAATCGTTTCGCACGACGA AACCACGTTTCTGCGAGAAAATTCGAGGAAATTCAATCTCGATTTGGGAGGGCCTAGGGCATTGTTCAGCGCGGATAAGA CCATCGATCTGTTGTTGAAGTCCGGTGCGGCGATGTACTTGGAGTTCAAAGGCATCGATGCGACGCTCGTCTACGAAGCG AATGGCGGATTGGTCGACGTGCCGGATTCTCGCGGCGCGATTTTCAGAGATAAGAACCTCTCGCTGAAGGAGAAGAACCA ATTGATGAGATTCTTCAAGCTCGTTCAGCAACACCTGGGTGATAATCAAGATGAGAAAATCTCGGAGGAAGATATGGAGA GTCCGTTTGTTAGTTTCTTGGAGAAAATGCGGTTGCCGCCGAAGATAAAATCGTTTCTTTTGTATGCTATAGCTATGTTA GATTATGATCAAGAGAATAGTGAGGTTTGTAAGGATGTATTTAAAACAAAGGATGGAATAGATCGTCTAGCACAATACAG CTCATCTGTTGGAAGGTATCCCAATGCACCAGGGGCTTTGCTTTATCCTACTTATGGTGAAGGAGAACTTCCACAAGCTT TTTGTCGCCGTGCTGCTGTCAAAGGTTGCATCCATGTTCTCAGAATGCCAGTCATTTCTCTGCTTATTGATAAGGTTACT GGGCTTTATAAAGGTGTTAGATTAGCTTCAGGTCAGGATTTATACAGCCATCAAATAATCCTAGACCCATGCTTTACAAT TCCTTCCCCATTATCGTTATCTCCTGGAGATTTTCCCAGTGAAAGGCTCCAAATGTTGAGTCTGAGAGATATTAAAGGAA TGGTCGCTAGGGGAATATGCATCACAAGGAATTCCATAAAGCCAGATGTATCTAATTGCTCGGTGGTGTGTCCTCCTAGA TCATTGTATCCGGAACAGGTGACATCAATCAGAGCTCTTCAGTTAGGATCAAATGTTGCTGTTTGTCCTGCGGGCACCTT TGTTTTATACTTTTCCACTTTGTGCAATGATGCCGATGAAGGAAAGAAGTTAATAAAAGCAGCCATGGATGCCCTTCTTA CACTGCCCGGATGTGGAAACTCTGAAAACATTCCCATTGTTCAAAGTGATAGTGCAGATGTAAAACCCAATGTGCTCTGG AGTGCACTGTATATTCAGAAATTGACTACGAGTAAATTTGAATTTATCAGCTCCACTTCTACGCCGGATGGAAATCTAAA CTACAATGACATTTTAGATGCAACCGAGAAGCTATTTGGTCAAATGTACCCCAATGAAGAATTCTTTCCACAGACAACAT CACCTGAAGACAACACAGACGAAAATGGGGTAACTCTGGATGACTAA
Protein sequence (LotjaGi2g1v0355200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGQDEEALSYPPIDPVNYDLIIVGTGLSESIIAAAASAVGKTVLHLDPNSFYGSHFASLSIDEFTSYLNSPPTSIPTAAA SGDSDYAVVDLVRQPLCSDAEIVSHDETTFLRENSRKFNLDLGGPRALFSADKTIDLLLKSGAAMYLEFKGIDATLVYEA NGGLVDVPDSRGAIFRDKNLSLKEKNQLMRFFKLVQQHLGDNQDEKISEEDMESPFVSFLEKMRLPPKIKSFLLYAIAML DYDQENSEVCKDVFKTKDGIDRLAQYSSSVGRYPNAPGALLYPTYGEGELPQAFCRRAAVKGCIHVLRMPVISLLIDKVT GLYKGVRLASGQDLYSHQIILDPCFTIPSPLSLSPGDFPSERLQMLSLRDIKGMVARGICITRNSIKPDVSNCSVVCPPR SLYPEQVTSIRALQLGSNVAVCPAGTFVLYFSTLCNDADEGKKLIKAAMDALLTLPGCGNSENIPIVQSDSADVKPNVLW SALYIQKLTTSKFEFISSTSTPDGNLNYNDILDATEKLFGQMYPNEEFFPQTTSPEDNTDENGVTLDD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 4 | 82 | 79 | 3.5E-23 | ||
| PANTHER | 12 | 542 | 531 | 1.3E-178 | – | |
| PANTHER | 12 | 542 | 531 | 1.3E-178 | ||
| Gene3D | 15 | 528 | 514 | 8.5E-120 | ||
| SUPERFAMILY | 16 | 342 | 327 | 4.06E-37 | ||
| Pfam | 17 | 103 | 87 | 2.3E-10 | ||
| PRINTS | 19 | 37 | 19 | 1.6E-24 | ||
| PRINTS | 37 | 54 | 18 | 1.6E-24 | ||
| PIRSF | 90 | 545 | 456 | 5.0E-108 | ||
| Gene3D | 94 | 487 | 394 | 8.5E-120 | – | |
| Pfam | 114 | 452 | 339 | 4.1E-27 | ||
| PRINTS | 134 | 150 | 17 | 1.6E-24 | ||
| Gene3D | 167 | 277 | 111 | 8.5E-120 | – | |
| PRINTS | 184 | 199 | 16 | 1.6E-24 | ||
| PRINTS | 286 | 307 | 22 | 1.6E-24 | ||
| SUPERFAMILY | 372 | 490 | 119 | 1.31E-16 | – | |
| MobiDBLite | 527 | 548 | 22 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GDP-dissociation inhibitor activity | Prevents the dissociation of GDP from a GTPase, thereby preventing GTP from binding. | ||
| Cellular component | Rab-protein geranylgeranyltransferase complex | A heterodimeric enzyme complex, which in mammals is composed of an alpha and a beta subunit, and which associates with an accessory protein Rep (Rab escort protein). Catalyzes of the transfer of a geranyl-geranyl group from geranylgeranyl pyrophosphate to a Rab protein. | ||
| Biological process | Intracellular protein transport | The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell. | ||
| Biological process | Small GTPase mediated signal transduction | Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals. | ||
| Biological process | Protein geranylgeranylation | The covalent attachment of a geranylgeranyl group to a protein. |
Expression pattern of LotjaGi2g1v0355200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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