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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0345500 |
| Transcript ID | LotjaGi1g1v0345500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Geranylgeranyl transferase type-2 subunit alpha 1; TAIR: AT4G24490.1 RAB geranylgeranyl transferase alpha subunit 1; Swiss-Prot: sp|Q8VYB7|PGTA1_ARATH Geranylgeranyl transferase type-2 subunit alpha 1; TrEMBL-Plants: tr|A0A0B2PII6|A0A0B2PII6_GLYSO Geranylgeranyl transferase type-2 subunit alpha; Found in the gene: LotjaGi1g1v0345500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:81222934..81228311) extracted from Lotus japonicus Gifu genome v1.2.
CCACATCAGCGCCACACCTAACTTGCACCGAGCAAGGTCACAATGGTGTCGTCTCTGATTTGTTGGGAGAGCATCCCCTT AAATTAAAAGAAAACACTACTAGGTATAAAAAATAAAACCAAATTCAAAAAATTAAAAATTAAAAAAACATAACTAAAAT CCAAACCATGAACAATATTCTGAGATCTGCTTCCAAAAATTAAAATAAAATGAGGGAGAAGGCTGGCTTACAGTGAAGTG AAGTAACAAGAGTTGGTGTTTGAAAAATGCACGGTCGTCCTCGCCACCCGTCGAAGCCAGAAGACGCAACAGCGTTAGCA GCCAAAGCTGAAAAGCTTCGTTCACTTCAATCTCAGTTCCTCTCCAATCACCACAATCGCATGTTGCTCCTTCTTCTTCT TCAACTCTCTCTCACTCACACTCTTCTTCTCCAATTCACTTTTTCTTAATTTAATTTCAAATTTCTGGTTTCAGATATAG CAAGGAAGCCCTAGATTTGAGCGCGAAGCTTCTGGAAGCTAATCCAGAATGCTACACCGCTTGGAATTACCGGAAACTCG CCGTTCAACACTCCCTCTCTCACCCCGATTCCGATTCCGATCGTCAATCTCTCTTCGATGAGGAACTTAGAGTGGTGCGT TTTCACTTTCAGATTATTGATTTGAATCCTGAATAGTGTAGATGGTGAATTTTGGTATCGGTTTTCAGGTGGAGAGTGCG TTGAGGAAGAATTTCAAGTCTTATGGTGCCTGGCATCATAGAAAATGGGTGCTAAGCAAGGGGCATTCGTCCGTGGACAA CGAATTGCGTCTTCTGAATGGTTTTCAGAAGGCCGATCCTCGGAATTTTCACGCATGGAATTACCGAAGGTTAAATATTG ATATTGATATTGCATTTTCTATTATGGAAAAGAGTTTATGCTATTTGATTTTGGAGATGGTTTGGTAAGTTTGTGTGTGT GTGTGTGTGTGTGCATTTTGATTTTGCAGGTTTGTTGCTGGGTTGATGAAAAGATCAGATGAGGATGAGTTGAAATACAC AGAGGAAGTGATTGGGGCTAATTTTAGTAATTACTCTGCGTGGCATAATCGGAGGTATGACACTGTCGCGGAATTTATAA TTCAAAGGGGCATTCAGTTGCTGGCTGTGTGATTTTATCTACTGTTGAACTCATTTAACTACCTGAGTTACATAGACTTG TATATATTGTTCAAAACTCGCCAACTTGCCGTGAACTGTTTTACTCGTCTTAGCAGTGAGCATGTATGTGTCTCTGAAAA ATGAAGAAATTGCTAAGCTGGGAATGATGTTTTATTGCTGTATCGCGCATCTTAGGGTCTATTGCTGTTTTATTATTGAA TTATGTTCTAGAAACATACATTTGTCATTGATCATCCTCAAATGTTTTTGACATGGCTTTGGGTGTGTGCTTCTGATATC TGTGCTTGATCAATTGTTAGTTTGTTAGTGAGGACAGTGGTTTGCTTGCATGCCTACACCCATCTGGGTATTTGATAAGT ACTGTTTAGTATGGTCATTAATCAATCAGTTTCAACCTTTGAAGCACTCTACAAGATTCCCAAGGACATAAACAGATTGA TAACATATTGTTACATGAATTTAAAGTACCCCATTCAGAGCTTGATTTGGTGACTTGCCCTTTTCTTTCAAAATATAACC TAGGTCTTTAATGGTCATCGTGCATGATGCAGTGGTTTTTATCTTTGGATGTGAAAGATATTTTTTGACAGTGTAGGGAA GTTTGCCAGTGTACATGTACTATCCCATTAATGTTGTTGATATCTTTTTTTGGTTTTCATTTAATTTTTTGGGGGGTCAA ATCAACACTATTCTTGAAGATTGTTTCATTGGATAAAACGTGGCTCTTGATTAACTAACTTTATTAATACATATTCCTTT AAGAACTTTTCAGTGCGCTTTTGTCTGATTTATTGAAAAGAAAGGCTGAAGGATATTTCCCTAAAGAAAAAGTTTTGGAA GAGGAGTATGAGCATGTCCATAATGCTATTTTTACTGATCCAGATGATCAGAGTGGCTGGTTTTATCATCTTTGGCTTAT TGATCAAACAGTGAAAACTGATGCTCCTCTACTTGTTTCATCTTGGCCTTCTGATGGATCTAATATAACCCTAAATGGAA ACAACTGCCTTCATGATTGTGGTTTGTCTCTGTTGAATAGTACACTATCAGACACTGGAACACTTCCGGTTATTCTTTAT TTCAATCAAGCTGTTGAAGGCTTAAACTCATCATCAGTGTCTGTTAAATCTGAACTTATAAAGGAGGATCTTGTTTGGAA ACCACTCTCAACAATCAACTCAAATACTGCTAAAGTTTGGGTTGCGTATCTAAAGCTTGGAAATATAGAGCTCCAATCGT CGAAAACTTACTCCGTAGAGATCAGCATTGGACACGGTATTGTCTCTTCCAGCGGATATCATTATAGCAATCCTTCCCAA GTTGCCTTTAAAGTGTGTGCACAGACTGCTTATACGGATCCTGCTGACCAACAGTGTGGGAAAAGGACTTCATGGAAGGA TGAAGATTTTCAAAAAATTGATCATTCTGAGGAACCAGATTCAACTCTTTGTGCTGATCAGATAATTACTGAAAACCACC ATATTCCAACAAAATCCATTTGGAGCATGGAGAAAATTGATGAAGAAATAACTAATTTTCGGGATTTATTGTCTGAGTAT GACTGGTAGGGTTGATTTGTTAATGGATGAGTTCATTATTTGAAATGTTACCTAGTATTTTCTTTTTCATATTTTCTCGT TTTATTCCTATATGATTTTGTGCCTTTTTTTTTTATTGTAGTAAAATTGGGAAGCTTACACTTGCAAGACTTTTGACTGC TTTTGATTTGTTATCATCTCAACATGATAAAAGAAAATGTAATACTGAAGAAGTTCTTCAACTTTATGATGATCTGATGA AGTTGGATCCAACACATTCTTTATACTACAAGGATGAGCGTAGTCTGGTATTACTTCAGCAGGTAATGTACTCTTTTTCT GTGTTAAATATCTACCAGAACATGATTTCGTGCCCCTTCCACTGTTGTTAATCATGGTTCAAATGCTCATGTGAATATTA ATTATGATAGTCAGTTGGAATAACTGTATATTTCATTTTGTCTGCTCTCAAATCTCAAATGATTAACAGAAAACATGACT ATCATTTGGGTTTAGCCAAAAAATATTTTCTAACATTCTTATTTGGGATATTGGAAAGAAAGAAAAAAACTGAAACCGAA ATTTTTTTCAGAACCAAACTCTTGCTTAAAATCTCAGATTGGAATATGTTGTAGTTATCCACATGTATTTTTTCAGTAAA CTCATTTCGATAAAATTGCACTTGACTTTGGAAGCCTTTTTATGAGGCCATGCTGGTATGCGTTTATTGTTAAAAACCTA GCCTTAATCTTATGTAATTGGAAATCAGTTCTTTACATTCATGTGCTGAGGATTCTGCAGATAACTTCAACTAGGAGGTG TTTACTACCATACTGCCACCACTATAAAGATGCTACAGAAACAATCACAGGTTATGTCTGTCTACGACTGCAAAATCTAT CATTGTCACGGATGGGGTCTATTAAGAATTTATTGTGGGTACAAATGCTAGACCTTAGCCACAACGAACTTCGATCAATT GAAGGTAGAAATCTTATAATTTTGCATTGACGCACCTTTTGCCTCCTCTCAAATATTGCAATATTCTAGACCTGTTGCTA CTAACCGTGTCAGTAGGATGGATTTTAATACGCCATTGTGCTTGATCCTGTATCATTGATTCCTGAAGCCCCTATTTGTT ATACTTAACTAAACTGCATGAAATTGTACTCTTCTATTTCATTTTTAACTTTCACAACATTTAGCAAACCTCCCGCTTTC TATCCATGTTTTGTTAACTCAAGTCTTTCCTGATGTTGAATATATGTAGCATTAGTAAGAACACTGACATCAATGGTTGA ATGAAAATTGATAAATTCACTTTAATGATTTGAATGTTATATTTTCATGCAATATCTATTTACCCAACTATAACAGACAT TCAGATAAGATGCCATCTTTGAAGTTATTATCTAAAGAAATTGGATCTCAGACGGTTGTATACTTGTATCTACATCTAAG CTTAAGTTATATTTGGCTGATCACTTTTGGAAAGTTTAGCTTTTGACATTGTGTCTAAAGGTGGAAAGAGTGTCTCATAC TGAATCTTTTGACAGGTTTGGAGGCCATGCAACTTCTATCTTGCTTAAATCTGAGTCATAATAAAATTGGTAGTTTTACT GCTCTGGGGCCTCTCAGATTGATCAAGTCACTTAAAGTCTTGAATATCTCATACAATGAGTTAGGCTCTCACTCGATTGA CACCACAAGATATCTATGCTCTTCTCCTTTAGCTCATACAGAAGAATTTGCCTGGGATCGTTTTGAAACCCTTGCTGGCA GCACCAGGGCCACAAATTTTTGGGAAGCTTTCTTGATATTCGAAAGCATGAACTTGACAGAGTTAAACATAACAGGGAAT GCAGTTTCTGATGAGAACTTCAGGTCCTTTATTGTCAAAGTTTTGCCTACTCTGAAGTGGCTAGATGGTGGGGAATTATC TTGAACTCTTAACTTTTTATGTTGGCTTTTTAGGGATACAGTTTTATTTTCTGGTATAATATAGATACCCTTTCATCTAG AAGGTCATTCACTCATTGGGTATCCCTTATACCTGCCTTGATACACGGCATTTCTGTAGTTGTAATGCTTTTGGTACTTG CATTAGGCGCTACACTGCTTATAGTAAGGCATGTAAAACTGAGTGACATTTTTTTACCATCTATACTATACCAAAGGTCC AAAAACTACATCTTTGAATTTTGATGAGTGATTGCTTTTCTGTTCAAAATTCAAATAATCAAAGCTCACTGCTTTTCCTC AGCCATGAAGGAAAAGGTCCAGTTTTTGTATAATAATTTAGCATATACAAGATCTTGGATATGCCTTTTTAGTCTTGAAT TTCACGTGCATGAAGGTGTTGTGTATCCTCTATTAAAGGATGGAAGCATCTTTTTTTGTGTATCTTAAACTTGTAATTTG GACAGTGCATCCTTCAGAAGGTGATTGTGCTGAGAGAAAATTGATTTAAAAATCGAAAATATAAGTTTATCAGTAAATGG ATAGAACATTGGAGTATGGGAGTATAAATCGTATTTGTACCAATGCAATGGTTCCCCAATTAAAATGGCTTATGGCCTAG CAGCAAAATCAAAATGGAGTCAGGTAAATGGAGCACTTATGTGGTGTTGAGTTGTGGCATTGTTGGATGGTGCCAGACAA TGGTGGTTGTGATAGAGG
CDS sequence (LotjaGi1g1v0345500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCACGGTCGTCCTCGCCACCCGTCGAAGCCAGAAGACGCAACAGCGTTAGCAGCCAAAGCTGAAAAGCTTCGTTCACT TCAATCTCAGTTCCTCTCCAATCACCACAATCGCATATATAGCAAGGAAGCCCTAGATTTGAGCGCGAAGCTTCTGGAAG CTAATCCAGAATGCTACACCGCTTGGAATTACCGGAAACTCGCCGTTCAACACTCCCTCTCTCACCCCGATTCCGATTCC GATCGTCAATCTCTCTTCGATGAGGAACTTAGAGTGGTGGAGAGTGCGTTGAGGAAGAATTTCAAGTCTTATGGTGCCTG GCATCATAGAAAATGGGTGCTAAGCAAGGGGCATTCGTCCGTGGACAACGAATTGCGTCTTCTGAATGGTTTTCAGAAGG CCGATCCTCGGAATTTTCACGCATGGAATTACCGAAGGTTTGTTGCTGGGTTGATGAAAAGATCAGATGAGGATGAGTTG AAATACACAGAGGAAGTGATTGGGGCTAATTTTAGTAATTACTCTGCGTGGCATAATCGGAGTGCGCTTTTGTCTGATTT ATTGAAAAGAAAGGCTGAAGGATATTTCCCTAAAGAAAAAGTTTTGGAAGAGGAGTATGAGCATGTCCATAATGCTATTT TTACTGATCCAGATGATCAGAGTGGCTGGTTTTATCATCTTTGGCTTATTGATCAAACAGTGAAAACTGATGCTCCTCTA CTTGTTTCATCTTGGCCTTCTGATGGATCTAATATAACCCTAAATGGAAACAACTGCCTTCATGATTGTGGTTTGTCTCT GTTGAATAGTACACTATCAGACACTGGAACACTTCCGGTTATTCTTTATTTCAATCAAGCTGTTGAAGGCTTAAACTCAT CATCAGTGTCTGTTAAATCTGAACTTATAAAGGAGGATCTTGTTTGGAAACCACTCTCAACAATCAACTCAAATACTGCT AAAGTTTGGGTTGCGTATCTAAAGCTTGGAAATATAGAGCTCCAATCGTCGAAAACTTACTCCGTAGAGATCAGCATTGG ACACGGTATTGTCTCTTCCAGCGGATATCATTATAGCAATCCTTCCCAAGTTGCCTTTAAAGTGTGTGCACAGACTGCTT ATACGGATCCTGCTGACCAACAGTGTGGGAAAAGGACTTCATGGAAGGATGAAGATTTTCAAAAAATTGATCATTCTGAG GAACCAGATTCAACTCTTTGTGCTGATCAGATAATTACTGAAAACCACCATATTCCAACAAAATCCATTTGGAGCATGGA GAAAATTGATGAAGAAATAACTAATTTTCGGGATTTATTGTCTGAGTATGACTGTAAAATTGGGAAGCTTACACTTGCAA GACTTTTGACTGCTTTTGATTTGTTATCATCTCAACATGATAAAAGAAAATGTAATACTGAAGAAGTTCTTCAACTTTAT GATGATCTGATGAAGTTGGATCCAACACATTCTTTATACTACAAGGATGAGCGTAGTCTGGTATTACTTCAGCAGATAAC TTCAACTAGGAGGTGTTTACTACCATACTGCCACCACTATAAAGATGCTACAGAAACAATCACAGGTTATGTCTGTCTAC GACTGCAAAATCTATCATTGTCACGGATGGGGTCTATTAAGAATTTATTGTGGGTACAAATGCTAGACCTTAGCCACAAC GAACTTCGATCAATTGAAGGTTTGGAGGCCATGCAACTTCTATCTTGCTTAAATCTGAGTCATAATAAAATTGGTAGTTT TACTGCTCTGGGGCCTCTCAGATTGATCAAGTCACTTAAAGTCTTGAATATCTCATACAATGAGTTAGGCTCTCACTCGA TTGACACCACAAGATATCTATGCTCTTCTCCTTTAGCTCATACAGAAGAATTTGCCTGGGATCGTTTTGAAACCCTTGCT GGCAGCACCAGGGCCACAAATTTTTGGGAAGCTTTCTTGATATTCGAAAGCATGAACTTGACAGAGTTAAACATAACAGG GAATGCAGTTTCTGATGAGAACTTCAGGTCCTTTATTGTCAAAGTTTTGCCTACTCTGAAGTGGCTAGATGGTGGGGAAT TATCTTGA
Protein sequence (LotjaGi1g1v0345500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MHGRPRHPSKPEDATALAAKAEKLRSLQSQFLSNHHNRIYSKEALDLSAKLLEANPECYTAWNYRKLAVQHSLSHPDSDS DRQSLFDEELRVVESALRKNFKSYGAWHHRKWVLSKGHSSVDNELRLLNGFQKADPRNFHAWNYRRFVAGLMKRSDEDEL KYTEEVIGANFSNYSAWHNRSALLSDLLKRKAEGYFPKEKVLEEEYEHVHNAIFTDPDDQSGWFYHLWLIDQTVKTDAPL LVSSWPSDGSNITLNGNNCLHDCGLSLLNSTLSDTGTLPVILYFNQAVEGLNSSSVSVKSELIKEDLVWKPLSTINSNTA KVWVAYLKLGNIELQSSKTYSVEISIGHGIVSSSGYHYSNPSQVAFKVCAQTAYTDPADQQCGKRTSWKDEDFQKIDHSE EPDSTLCADQIITENHHIPTKSIWSMEKIDEEITNFRDLLSEYDCKIGKLTLARLLTAFDLLSSQHDKRKCNTEEVLQLY DDLMKLDPTHSLYYKDERSLVLLQQITSTRRCLLPYCHHYKDATETITGYVCLRLQNLSLSRMGSIKNLLWVQMLDLSHN ELRSIEGLEAMQLLSCLNLSHNKIGSFTALGPLRLIKSLKVLNISYNELGSHSIDTTRYLCSSPLAHTEEFAWDRFETLA GSTRATNFWEAFLIFESMNLTELNITGNAVSDENFRSFIVKVLPTLKWLDGGELS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 505 | 505 | 1.2E-130 | ||
| PANTHER | 1 | 505 | 505 | 1.2E-130 | – | |
| Gene3D | 1 | 245 | 245 | 1.4E-79 | – | |
| SUPERFAMILY | 13 | 506 | 494 | 6.15E-70 | – | |
| ProSiteProfiles | 40 | 74 | 35 | 14.541 | ||
| Pfam | 45 | 71 | 27 | 1.6E-6 | ||
| ProSiteProfiles | 85 | 119 | 35 | 15.603 | ||
| Pfam | 89 | 116 | 28 | 5.0E-9 | ||
| ProSiteProfiles | 120 | 154 | 35 | 13.851 | ||
| Pfam | 124 | 148 | 25 | 2.1E-6 | ||
| ProSiteProfiles | 155 | 189 | 35 | 15.232 | ||
| Pfam | 159 | 185 | 27 | 1.1E-7 | ||
| ProSiteProfiles | 201 | 235 | 35 | 11.735 | ||
| Pfam | 205 | 232 | 28 | 8.6E-5 | ||
| SUPERFAMILY | 525 | 610 | 86 | 1.36E-13 | – | |
| ProSiteProfiles | 551 | 572 | 22 | 7.766 | ||
| ProSiteProfiles | 573 | 594 | 22 | 7.827 | ||
| ProSiteProfiles | 598 | 621 | 24 | 5.402 | ||
| ProSiteProfiles | 659 | 679 | 21 | 4.847 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Cellular component | Rab-protein geranylgeranyltransferase complex | A heterodimeric enzyme complex, which in mammals is composed of an alpha and a beta subunit, and which associates with an accessory protein Rep (Rab escort protein). Catalyzes of the transfer of a geranyl-geranyl group from geranylgeranyl pyrophosphate to a Rab protein. | ||
| Molecular function | Protein prenyltransferase activity | Catalysis of the covalent addition of an isoprenoid group such as a farnesyl or geranylgeranyl group via thioether linkages to a cysteine residue in a protein. | ||
| Biological process | Protein prenylation | The covalent attachment of a prenyl group to a protein; geranyl, farnesyl, or geranylgeranyl groups may be added. | ||
| Biological process | Protein geranylgeranylation | The covalent attachment of a geranylgeranyl group to a protein. |
Expression pattern of LotjaGi1g1v0345500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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