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| Field | Value |
|---|---|
| Gene ID | Lj1g3v1548830 |
| Transcript ID | Lj1g3v1548830.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Geranylgeranyl transferase type-2 subunit alpha [Medicago truncatula] gi|357465223|ref|XP_003602893.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 295 | 295 | 1.20E-145 | – | |
| PANTHER | 1 | 295 | 295 | 1.20E-145 | ||
| Gene3D | 1 | 233 | 233 | 9.20E-89 | – | |
| SUPERFAMILY | 13 | 231 | 219 | 9.42E-69 | – | |
| ProSiteProfiles | 40 | 74 | 35 | 14.541 | ||
| Pfam | 45 | 71 | 27 | 1.20E-06 | ||
| ProSiteProfiles | 83 | 117 | 35 | 15.603 | ||
| Pfam | 87 | 114 | 28 | 2.40E-09 | ||
| ProSiteProfiles | 118 | 152 | 35 | 13.851 | ||
| Pfam | 122 | 146 | 25 | 1.60E-06 | ||
| ProSiteProfiles | 153 | 187 | 35 | 16.126 | ||
| Pfam | 157 | 183 | 27 | 2.30E-08 | ||
| ProSiteProfiles | 199 | 233 | 35 | 11.735 | ||
| Pfam | 204 | 230 | 27 | 1.50E-04 | ||
| PANTHER | 391 | 513 | 123 | 1.20E-145 | – | |
| PANTHER | 391 | 513 | 123 | 1.20E-145 | ||
| Gene3D | 416 | 497 | 82 | 9.20E-89 | – | |
| SUPERFAMILY | 425 | 504 | 80 | 9.42E-69 | – | |
| SUPERFAMILY | 523 | 608 | 86 | 1.81E-13 | ||
| Gene3D | 529 | 611 | 83 | 2.10E-17 | ||
| ProSiteProfiles | 549 | 570 | 22 | 7.766 | ||
| ProSiteProfiles | 571 | 592 | 22 | 7.827 | ||
| ProSiteProfiles | 596 | 619 | 24 | 5.402 | ||
| Gene3D | 647 | 691 | 45 | 2.10E-17 | ||
| ProSiteProfiles | 657 | 677 | 21 | 4.847 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Cellular component | Rab-protein geranylgeranyltransferase complex | A heterodimeric enzyme complex, which in mammals is composed of an alpha and a beta subunit, and which associates with an accessory protein Rep (Rab escort protein). Catalyzes of the transfer of a geranyl-geranyl group from geranylgeranyl pyrophosphate to a Rab protein. | ||
| Molecular function | Protein prenyltransferase activity | Catalysis of the covalent addition of an isoprenoid group such as a farnesyl or geranylgeranyl group via thioether linkages to a cysteine residue in a protein. | ||
| Biological process | Protein prenylation | The covalent attachment of a prenyl group to a protein; geranyl, farnesyl, or geranylgeranyl groups may be added. | ||
| Biological process | Protein geranylgeranylation | The covalent attachment of a geranylgeranyl group to a protein. |
Expression pattern of Lj1g3v1548830.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v1548830.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.