Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

GO:0006189

View this GO term in other databases

Overview

Field Value
Namespace Biological process
Short description 'de novo' IMP biosynthetic process
Full defintion The chemical reactions and pathways resulting in the formation of IMP, inosine monophosphate, by the stepwise assembly of a purine ring on ribose 5-phosphate.
Subterm of

Relationships

The relationship of GO:0006189 with other GO terms.

Relationship type GO terms
Is a
Regulates n.a.
Part of n.a.
Positively regulates n.a.
Negatively regulates n.a.

Ancestor tree

A force layout showing the ancestor tree for GO:0006189, and its immediate children. If you wish to explore the tree dynamically, please use the GO Explorer.

  • Drag and drop nodes to manually position (i.e. fix) them
  • Double click on a node to unfix the node
  • Press Alt and double click to visit the page containing further details of a GO term
  • Right clicking on a node will reveal a context menu

Controls

Force layout

Every force layout is different—we have picked a set of parameters which suits most GO ancestor tree chart well. If you mess something up—don't worry: hitting the "reset view" button above will reset the chart to its default layout.

Additional data

This table contains additional metadata associated with the GO entry's definition field.

Field Value
GOCmah
ISBN
BiochemistryBiochemistry

Lubert Stryer · ISBN: 0716720094

, 1995 · 1150 pages

This book is an outgrowth of my teaching of biochemistry to undergraduates, graduate students, and medical students at Yale and Stanford. My aim is to provide an introduction to the principles of biochemistry that gives the reader a command of its concepts and language. I also seek to give an appreciation of the process of discovery in biochemistry.

Associated Lotus transcripts 20

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Transcript Name Description GO terms GO count
Lj0g3v0036669.1
– PREDICTED: phosphoribosylaminoimidazole carboxylase, chloroplastic-like [Glycine max] gi|356535191|ref|XP_003536132.1|
GO terms
1
Lj0g3v0078859.1
– PREDICTED: phosphoribosylaminoimidazole carboxylase, chloroplastic-like [Glycine max] gi|356535191|ref|XP_003536132.1|
GO terms
1
Lj0g3v0078859.2
– PREDICTED: phosphoribosylaminoimidazole carboxylase, chloroplastic-like [Glycine max] gi|356535191|ref|XP_003536132.1|
GO terms
2
Lj0g3v0241679.1
– PREDICTED: phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic/mitochondrial-like [Glycine max] gi|356512850|ref|XP_003525128.1|
GO terms
2
Lj0g3v0241679.2
– RecName: Full=Phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic/mitochondrial; AltName: Full=AIR synthase; Short=AIRS; AltName: Full=Phosphoribosyl-aminoimidazole synthetase; AltName: Full=VUpur5; Flags: Precursorgi|945060|gb|AAC14578.1| aminoimidazole ribonucleotide (AIRS) synthetase [Vigna unguiculata] gi|1709925|sp|P52424.1|PUR5_VIGUN
GO terms
2
Lj4g3v1236970.1
– Formyltetrahydrofolate deformylase [Medicago truncatula] gi|357502477|ref|XP_003621527.1|
GO terms
2
Lj4g3v1236970.2
– PREDICTED: formyltetrahydrofolate deformylase-like [Glycine max] gi|356563338|ref|XP_003549921.1|
GO terms
2
Lj4g3v2742680.1
– PREDICTED: phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic/mitochondrial-like [Glycine max] gi|356512850|ref|XP_003525128.1|
GO terms
2
Lj4g3v2742680.2
– RecName: Full=Phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic/mitochondrial; AltName: Full=AIR synthase; Short=AIRS; AltName: Full=Phosphoribosyl-aminoimidazole synthetase; AltName: Full=VUpur5; Flags: Precursorgi|945060|gb|AAC14578.1| aminoimidazole ribonucleotide (AIRS) synthetase [Vigna unguiculata] gi|1709925|sp|P52424.1|PUR5_VIGUN
GO terms
2
LotjaGi1g1v0649600.1
– Methionyl-tRNA formyltransferase; TAIR: AT1G31220.1 Formyl transferase; Swiss-Prot: sp|P52423|PUR3_VIGUN Phosphoribosylglycinamide formyltransferase, chloroplastic; TrEMBL-Plants: tr|A0A0S3RWK0|A0A0S3RWK0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0649600
GO terms
2
LotjaGi2g1v0405000.1
– Phosphoribosylformylglycinamidine synthase; TAIR: AT1G74260.1 purine biosynthesis 4; Swiss-Prot: sp|Q9M8D3|PUR4_ARATH Probable phosphoribosylformylglycinamidine synthase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A072U5E4|A0A072U5E4_MEDTR Phosphoribosylformylglycinamidine synthase; Found in the gene: LotjaGi2g1v0405000
GO terms
2
LotjaGi4g1v0202000.1
– Methionyl-tRNA formyltransferase; TAIR: AT5G47435.1 formyltetrahydrofolate deformylase; Swiss-Prot: sp|Q93YQ3|PURU1_ARATH Formyltetrahydrofolate deformylase 1, mitochondrial; TrEMBL-Plants: tr|A0A0L9TQX6|A0A0L9TQX6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0202000
GO terms
2
LotjaGi4g1v0202000.2
– Formyltetrahydrofolate deformylase; TAIR: AT5G47435.1 formyltetrahydrofolate deformylase; Swiss-Prot: sp|Q93YQ3|PURU1_ARATH Formyltetrahydrofolate deformylase 1, mitochondrial; TrEMBL-Plants: tr|K7KN51|K7KN51_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0202000
GO terms
2
LotjaGi4g1v0202000.3
– Methionyl-tRNA formyltransferase; TAIR: AT5G47435.1 formyltetrahydrofolate deformylase; Swiss-Prot: sp|Q93YQ3|PURU1_ARATH Formyltetrahydrofolate deformylase 1, mitochondrial; TrEMBL-Plants: tr|A0A0L9TQX6|A0A0L9TQX6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0202000
GO terms
2
LotjaGi4g1v0410200.2
– Phosphoribosylformylglycinamidine cyclo-ligase; TAIR: AT3G55010.1 phosphoribosylformylglycinamidine cyclo-ligase, chloroplast / phosphoribosyl-aminoimidazole synthetase / AIR synthase (PUR5); Swiss-Prot: sp|P52424|PUR5_VIGUN Phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A0L9TJC7|A0A0L9TJC7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0410200
GO terms
2
LotjaGi5g1v0211000.1
– Formate-dependent phosphoribosylglycinamide formyltransferase; TAIR: AT2G37690.1 phosphoribosylaminoimidazole carboxylase, putative / AIR carboxylase; Swiss-Prot: sp|P55195|PUR6_VIGAC Phosphoribosylaminoimidazole carboxylase, chloroplastic; TrEMBL-Plants: tr|K7LJS8|K7LJS8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0211000
GO terms
2
LotjaGi5g1v0315300.1
– Phosphoribosylformylglycinamidine cyclo-ligase; TAIR: AT3G55010.1 phosphoribosylformylglycinamidine cyclo-ligase, chloroplast / phosphoribosyl-aminoimidazole synthetase / AIR synthase (PUR5); Swiss-Prot: sp|P52424|PUR5_VIGUN Phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A0L9TJC7|A0A0L9TJC7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0315300
GO terms
2
LotjaGi6g1v0063600.1
– Phosphoribosylformylglycinamidine synthase; TAIR: AT1G74260.1 purine biosynthesis 4; Swiss-Prot: sp|Q9M8D3|PUR4_ARATH Probable phosphoribosylformylglycinamidine synthase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A072TUU6|A0A072TUU6_MEDTR Phosphoribosylformylglycinamidine synthase; Found in the gene: LotjaGi6g1v0063600
GO terms
2
LotjaGi6g1v0063600.2
– Phosphoribosylformylglycinamidine synthase; TAIR: AT1G74260.1 purine biosynthesis 4; Swiss-Prot: sp|Q9M8D3|PUR4_ARATH Probable phosphoribosylformylglycinamidine synthase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A072TUU6|A0A072TUU6_MEDTR Phosphoribosylformylglycinamidine synthase; Found in the gene: LotjaGi6g1v0063600
GO terms
2
LotjaGi6g1v0063600.3
– Phosphoribosylformylglycinamidine synthase; TAIR: AT1G74260.1 purine biosynthesis 4; Swiss-Prot: sp|Q9M8D3|PUR4_ARATH Probable phosphoribosylformylglycinamidine synthase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A072U5E4|A0A072U5E4_MEDTR Phosphoribosylformylglycinamidine synthase; Found in the gene: LotjaGi6g1v0063600
GO terms
2

Co-occuring GO terms 1

A list of co-occurring GO terms within the L. japonicus gene space:

GO term Namespace Name Observations Saturation (%)
GO:0006189
Biological process 'de novo' IMP biosynthetic process 1 5.00