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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0202000 |
| Transcript ID | LotjaGi4g1v0202000.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Methionyl-tRNA formyltransferase; TAIR: AT5G47435.1 formyltetrahydrofolate deformylase; Swiss-Prot: sp|Q93YQ3|PURU1_ARATH Formyltetrahydrofolate deformylase 1, mitochondrial; TrEMBL-Plants: tr|A0A0L9TQX6|A0A0L9TQX6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0202000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:46758142..46761361) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCCATGGCCAGAAGAGTCTCCAAAGTTCTGGGATTACCCATCACGAACAACAACAGGAACATATGCTTCAAATCACT GGATCTCCCATCACCATCGTGTTCCTCACTCGCCCATGGAATCCATGTCTTTCATTGCCCTGTAAGTCACATTCGATGTA ACTCATGTTCTGCAATTCTTTGCTTTGCTTTGATTTTTGAATTGTGTGAACTGTTTTATTGAATAAAATGTGAGTTGAAT TGGTTTTGTGAATAGGATGCGGTTGGAATTGTTGCCAAGTTATCGGATTGTATTGCCTCTAGAGGTGGAAACATTCTCAC TGCTGACATTTTTGTACCTGAGAATAAACAAGTCTTCTACTCTAGAAGGTGCATCTCATTCTCTTTGTTTCTATGATGCA TGTCATACACTCACACACTGGCAAAATCAACGTTGTCTTGCTTGTTCATTATGAAAATACTTTTCCTCAATCCATAGCGA GAGTTTTGTTCACCTTTTGTCTCGAAGTGAGTGCTAATGTCTGTCTGTATTGGTGACGACGACTCAACGAGTATCCAAAC ATAATCTCTTTAAGCCTTGTATGGGTTAAAGGGATCTCTCTCTTTTTCCTTTTTGATCTTCAATGTGTTCCTACACTGAC TGTGTTTAATGCTGAAATAGTTCCAGTTCCTAACAAGTACTAGTACTATATGTTTTGTCATGCACTGATGTCCAGTTCAT CACATTGGGTGCTTGAGCTCCTTAATCCAATACATGCTTATAGATGTCAGATCTAAATATACATAAGCAGAGTTCAACTA GTTGGCATATGTTTGTTTATCCATTGGATTTGATGTGAATGTTTTTTTTTTTCAATCCAACAACTTTGCTTAGTTGGAAA CACTGTCTTGGAAAGCCAAATATGTCAGTTGAATGTGCTTTTAAATGGAAACCAAACACACTCTTAGCCATTTGAATAGG TATGTGGAGACAATGACTGCAGCTGCATCAACTTGTATTGATCATGCAGTGATTTTGTTTTTGATCCTGTTAAGTGGTCA CGGGTGCAAATGGAGGAGGATTTTCTGAAGCTTTCACAAGCATTCAGTGCAATGAAATCTGTTGTGAGGGTGCCATCTCT TGATCCTAAATATAAGATAGCTGTTCTGGCATCGAAGCAGGTGTGCATTATCACTCTAATCATGCTTTCTTATCTTTTTA TTTTATTTTATAAAATGAATCTACATTAATAGATAGATAAAGTTATTTGTTGAAGCTTTCTTTCTTTTGCCACAGGATCA CTGCCTGGTTGATTTGCTACATGGATGGCAGGATGGAAGACTTCCGGTGGATATCACTTGTGTAATTAGGTAAGTTTCAG AAATGACACCACAAAATTGTTTTTTATTCTTTCATACAATATACCTTTTAACTTTACTATATATTTGTGTTCTATGATCC ATTCACCAGTAATCATCATAGAGGTTCAAACACCCATGTGATTCGTTTTCTTGAAAGGCATGGTATTCCGTATCATTATT TAAGCACAACATCAGAAAATAAAAGAGAAGGGGAGATATTGGAGCTGATTCAGAATACTGATTTTTTAGTACTTGCGAGG TACATGCAGGTAAATAATTAATTAGAATTCTTGTTCTGTTCTCTGTATGTTTATTACAATTCTAATACTTGAAAAAACAA GACTTTGGTAACCAGACCTATTCTTAATATTTGGATGCTCTTTGGAAAAGTTGCTCTTCCCTCTAAAATTATCAAAATCT GATAAAAGCTTATAATTATCTTCTGCTGTATATCATTGTTAATATTCAACAGTATTAAACTATTGATACTTACAGCATTG ATTTATATGTAAAGGTATTATCAGGAAATTTTATAACGAGCTACGGGAATGACATAATTAACATTCACCATGGTCTATTG CCATCATTCAAGGGGGGTCATCCATCTAAACAGGTTGGTGTTCCTTCCCTTTCACTTGTTAAACTACTGCTACTTTTAAC CCTTTGTTATTTTGGCAGGCCTTTGAGGCAGGTGTTAAATTAATTGGTGCAACAAGTCACTTTGTGACTGAAGAACTTGA TGCTGGACCTATAATTGAACAAATGGTGAACATAAACTTTTCATACATATTTTTCTTATGTTCTTGTTTAATTAATTGCT TCTTTTCTCTGAATTGATTTAGGTGAGAATGTGAGATAGTATTCATTAGCATGTCAGAAGTCATGTATTTATGTTAGCTT TTAGTTTCATTTTATGCTAGATATAAATTCATTCTTGCGGGGCTATATTTCTGCCTTGGCCTACTGGTCATGAAACCTTA CTCTAGAGCCACCTAGAGTTAGAAGGGTCATTGAGAAAGTGTGAACAAAATGAAGGTGCAACTGGCCTGCTATATCTCCA ATTATTCTTGCATTCTTATGATCTTATGAATATATTTTTCTTTGTCTAAATTTTTCATATTTGATTTTACAATTGTTTGT TGGAAAAAGTATTCTGTCTTGCTGAATTTCAAGACGAAGAGAGACTGTTTGTATATCCTCTCTCCTTGTTTAGCCACAGA AAACAGAAAAGTAAGCTTCCAGCTCCTTTTAGATTTTGCTACGGAACAGAACATTATCCCGTCTTCTGTTTTGTGCAACT TCAGCTTATTGATCTCATGCAAGATTTGTGTTTTGAGGCAGTTCATTAGTCTCATGCAAGATTTAGGTTTTCTGAAAACG GATTTCCCGATAGACGTTCTTATTTGAAATTTGGGTGTTTTCTTGTTCTAAGATAAAGGACAACTACATTTGCTGCATTA AGATCATTTGCTGTGTCATTATGTAGACTAATTAAGCATGCTTAAATTCTGCCAATGCACGGTATATATCCTATACTTTA TAGCATGTTTGGAGTTTGGACAACTTCTCTTTCCCCCAAGTCAATTCTGACACCTGAAGTTACTACTCACATAAGCTTTT CACCATAATTGATTTTGACTTTAGAATTAATTGTAGAAGAATTTCTAAACTTGGACAGCCTATATGGCTGTATTCTATTT ATGTGAGGGTAAAATGGTTGAATCTATTTGCAGGTTGAGAGAGTTTCCCACAGAGATAACTTGCAGAGCTTTGTGCAGAA ATCAGAAAACCTTGAGAAACAATGCCTTTACAAGGCTATTAGATCTTATTGTGAACTTAGAGTATTGCCATATGAAGACA TGAGGACTGTTGTATTTTGA
CDS sequence (LotjaGi4g1v0202000.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCATGGCCAGAAGAGTCTCCAAAGTTCTGGGATTACCCATCACGAACAACAACAGGAACATATGCTTCAAATCACT GGATCTCCCATCACCATCGTGTTCCTCACTCGCCCATGGAATCCATGTCTTTCATTGCCCTGATGCGGTTGGAATTGTTG CCAAGTTATCGGATTGTATTGCCTCTAGAGGTGGAAACATTCTCACTGCTGACATTTTTGTACCTGAGAATAAACAAGTC TTCTACTCTAGAAGTGATTTTGTTTTTGATCCTGTTAAGTGGTCACGGGTGCAAATGGAGGAGGATTTTCTGAAGCTTTC ACAAGCATTCAGTGCAATGAAATCTGTTGTGAGGGTGCCATCTCTTGATCCTAAATATAAGATAGCTGTTCTGGCATCGA AGCAGGATCACTGCCTGGTTGATTTGCTACATGGATGGCAGGATGGAAGACTTCCGGTGGATATCACTTGTGTAATTAGT TTTCTTGAAAGGCATGGTATTCCGTATCATTATTTAAGCACAACATCAGAAAATAAAAGAGAAGGGGAGATATTGGAGCT GATTCAGAATACTGATTTTTTAGTACTTGCGAGGTACATGCAGGTATTATCAGGAAATTTTATAACGAGCTACGGGAATG ACATAATTAACATTCACCATGGTCTATTGCCATCATTCAAGGGGGGTCATCCATCTAAACAGGCCTTTGAGGCAGGTGTT AAATTAATTGGTGCAACAAGTCACTTTGTGACTGAAGAACTTGATGCTGGACCTATAATTGAACAAATGGTTGAGAGAGT TTCCCACAGAGATAACTTGCAGAGCTTTGTGCAGAAATCAGAAAACCTTGAGAAACAATGCCTTTACAAGGCTATTAGAT CTTATTGTGAACTTAGAGTATTGCCATATGAAGACATGAGGACTGTTGTATTTTGA
Protein sequence (LotjaGi4g1v0202000.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAMARRVSKVLGLPITNNNRNICFKSLDLPSPSCSSLAHGIHVFHCPDAVGIVAKLSDCIASRGGNILTADIFVPENKQV FYSRSDFVFDPVKWSRVQMEEDFLKLSQAFSAMKSVVRVPSLDPKYKIAVLASKQDHCLVDLLHGWQDGRLPVDITCVIS FLERHGIPYHYLSTTSENKREGEILELIQNTDFLVLARYMQVLSGNFITSYGNDIINIHHGLLPSFKGGHPSKQAFEAGV KLIGATSHFVTEELDAGPIIEQMVERVSHRDNLQSFVQKSENLEKQCLYKAIRSYCELRVLPYEDMRTVVF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 22 | 311 | 290 | 1.8E-157 | ||
| PANTHER | 22 | 311 | 290 | 1.8E-157 | – | |
| PIRSF | 38 | 311 | 274 | 3.4E-99 | – | |
| ProSiteProfiles | 41 | 124 | 84 | 10.126 | ||
| CDD | 41 | 112 | 72 | 1.86826E-17 | – | |
| Gene3D | 41 | 118 | 78 | 8.3E-13 | – | |
| PRINTS | 42 | 68 | 27 | 2.0E-22 | ||
| SUPERFAMILY | 44 | 111 | 68 | 1.67E-7 | – | |
| Gene3D | 126 | 311 | 186 | 4.7E-64 | – | |
| SUPERFAMILY | 127 | 305 | 179 | 2.35E-48 | ||
| PRINTS | 127 | 149 | 23 | 2.0E-22 | ||
| Pfam | 127 | 292 | 166 | 2.8E-30 | ||
| PRINTS | 262 | 284 | 23 | 2.0E-22 | ||
| PRINTS | 284 | 309 | 26 | 2.0E-22 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | 'de novo' IMP biosynthetic process | The chemical reactions and pathways resulting in the formation of IMP, inosine monophosphate, by the stepwise assembly of a purine ring on ribose 5-phosphate. | ||
| Molecular function | Formyltetrahydrofolate deformylase activity | Catalysis of the reaction: 10-formyltetrahydrofolate + H(2)O = (6S)-5,6,7,8-tetrahydrofolate + formate + H(+). | ||
| Biological process | Biosynthetic process | The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones. | ||
| Molecular function | Hydroxymethyl-, formyl- and related transferase activity | Catalysis of the transfer of a hydroxymethyl- or formyl group from one compound (donor) to another (acceptor). |
Expression pattern of LotjaGi4g1v0202000.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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