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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0381700 |
| Transcript ID | LotjaGi2g1v0381700.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | polyamine-modulated factor 1-binding protein; TAIR: AT2G17990.1 polyamine-modulated factor 1-binding protein; Swiss-Prot: sp|Q60675|LAMA2_MOUSE Laminin subunit alpha-2; TrEMBL-Plants: tr|I1J8L8|I1J8L8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0381700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:87816451..87818798) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCAGCAGATGAAGATATTTGCATGTCAGATTTGAAGTCTCAGCTGAGTCAATTACATGACACATGGAAGCAGGAAAT TGAAAGAAGCCAATCCCAAATGGATTTATTGCAAGCAAAGCTTATGGAGGTAAAGGATTGCATACAGGGTTCAGATGGAG ATGCAAAAAAGGAGTTGGAGGTTCTTTTGCGAAGAGTCAATACTTCTGCTACATTGTTGACATACTTAAAATCAAAAGCT AGACTCATGGCTGTTCCTCATCTAGCCCATACATCTTGTGGCATCAAACCATTAGAGGGGGTAGGCTTTGTCGACAAAAA TGGGACGCCATTATCAGGTTGGTCCAGCGATGTTGAGCTTTCTTCATTTAATGACGCAGATGAAGAATCTTGGATAGGAA TTAGCCGTCAGCATGGTTTCTTAGATGAACAGGATGCAGCTTATATAGGTGATGTACTCAAATCTGTAAACATGGTTGGA GATGTGATGGAAGTCCTTGTCAAAAGGGTTTTATTGGCAGAATCAGAAACTGCAGTGGAGAAGGAAAAAGCAAGTTTATG TCAGGAAGAAATTAAGCGGAAGTCTGCCCGGTTAGAGAATATGTCTATGAAATTAGAGGAGATGCAGCATTTTGTTTTGA GTACCAACAGTATTATAAATGAGATGCAGCAGAGAGTTGAGGATTTGGTTGAAGAGACAACCAGACAGAGCCAGCGAGCT GCTGAAAATGAAGAAGAGCTTTCTAGAGTGAAGCAGGAATTTGAGTCTCTGAAATCATATGTTAGCGGTCTAATCACAGT AAGAGAAACATTACTATCTTCAGAGAAGCAATTTCAAACTATTGAGAAGCTGTTTGAAAAGTGAGTACAGCATTATATAC CAATACGATTCTATGCAATGTTCTGATACTACATGTCTTTATGATTGTATGATTCTTTTACCTACATCTAGTTACTTGAG TTAAATGCCTCAGTGCACTTCCTGCTGCAAATTTTTGTACTTTATATAGTTTGATTTATTTTATCTTTCATTGATTCCAT TCCATCATGTGACTTTTTCTAGATCAAGCATTCTAGTGTGGTAAAATAATGTTATCCTTTTGTGGGTGTTGATAGGATCT GCTTGCATATGGACCCAATATATCTTCAACTTATATGTTAGAAGCATAGTTCGTATAGCTCAAGAGTACACTTGTGATTT GTGAACCTTTAATGAGAAAAGAAGTAATAGTATTAAATTTGGTGTTTTTGACATATATGTTAATTCTCTATGGGCAAGTT AAGAGCTAACTAAATTCTTGTTTATAATTTTTTTATTCGTGATTTTGTTAACTATAATGCTTTTATTCGATCAAAATCTC ATCTTCTGGCACAATATTTAGGAGGATGTCTTCCTTTATCAGTTCTACTTGACTTAATCACATTTATCTCATTTATCCTA GTTTTTTATTGAACACAGTGGCATTTTATTACCCTGAGGTTTGCTGGTTTTACTTTAAAAATATCATCTTGTTGGAAGTT GCAGCAACTTGGAACATATATTTAGTGGATGCATTTTTCTCGCTACTCTCTCTCCCTCCAATAGCAAACTAAACATGTAG AGTCTCAATTATTCTGTATGATTACTGCTTAATTTGAATAGTTCTTGCTTGATAGACATTAGCTGATGATTTATAAAATT GGGGGGTCTAGGGTTTAAACTTCAAGTTTTATACAGATTTGGTCCTTGTATTTTTGCAATGCTTCAATTCAATCCATTCA CTTTAAATGTTATTAGTATTGATAAATGCATTTGGAGGAATCTCCCTTGTTTAGGCAAATGCAGGCATGTTCTAGCCCCA AATGCGCAAATGTTTTTTTTTCCCTGAAAAATATGTGGAATGGTATATCCATAACCCAATAATAAAATGTTAATTTAAGT GTCCTATGATTGATCAAAAAGTCTGGTATTATGTTATGGTTATTTGGGTCTCTAATTGTGATGGTGACATGCTGCATTTC TAATTTAATCCATGCTTGTGTTACACTTACATGTGATGACTAGTTATGAACATCCGCAAATTTACTCGTTAATGGAGTCA GCTATTAATTTTAGTCCTCATATAGAATGTATATTGCAGTTATTGCTATCTAGTGATGTAATTGTCTTACTGTCTGATGT TGCTCTGGAGCAGGCTAGTTGCAAAGACTACTCAATTAGAGGGTGAGAAAATGCAGAAAGAGGCTGAAGTTCAGAAACTG ATGGAAGAGAATGTGAAGTTGAATGCACAGCTTGACAAGAAAGAGGCTCAACTTTTGGCTTTGAATGAACAATGCAAAGT AATGGCCTTGAGCGCTTCAAACATGTAA
CDS sequence (LotjaGi2g1v0381700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGCAGATGAAGATATTTGCATGTCAGATTTGAAGTCTCAGCTGAGTCAATTACATGACACATGGAAGCAGGAAAT TGAAAGAAGCCAATCCCAAATGGATTTATTGCAAGCAAAGCTTATGGAGGTAAAGGATTGCATACAGGGTTCAGATGGAG ATGCAAAAAAGGAGTTGGAGGTTCTTTTGCGAAGAGTCAATACTTCTGCTACATTGTTGACATACTTAAAATCAAAAGCT AGACTCATGGCTGTTCCTCATCTAGCCCATACATCTTGTGGCATCAAACCATTAGAGGGGGTAGGCTTTGTCGACAAAAA TGGGACGCCATTATCAGGTTGGTCCAGCGATGTTGAGCTTTCTTCATTTAATGACGCAGATGAAGAATCTTGGATAGGAA TTAGCCGTCAGCATGGTTTCTTAGATGAACAGGATGCAGCTTATATAGGTGATGTACTCAAATCTGTAAACATGGTTGGA GATGTGATGGAAGTCCTTGTCAAAAGGGTTTTATTGGCAGAATCAGAAACTGCAGTGGAGAAGGAAAAAGCAAGTTTATG TCAGGAAGAAATTAAGCGGAAGTCTGCCCGGTTAGAGAATATGTCTATGAAATTAGAGGAGATGCAGCATTTTGTTTTGA GTACCAACAGTATTATAAATGAGATGCAGCAGAGAGTTGAGGATTTGGTTGAAGAGACAACCAGACAGAGCCAGCGAGCT GCTGAAAATGAAGAAGAGCTTTCTAGAGTGAAGCAGGAATTTGAGTCTCTGAAATCATATGTTAGCGGTCTAATCACAGT AAGAGAAACATTACTATCTTCAGAGAAGCAATTTCAAACTATTGAGAAGCTGTTTGAAAAGCTAGTTGCAAAGACTACTC AATTAGAGGGTGAGAAAATGCAGAAAGAGGCTGAAGTTCAGAAACTGATGGAAGAGAATGTGAAGTTGAATGCACAGCTT GACAAGAAAGAGGCTCAACTTTTGGCTTTGAATGAACAATGCAAAGTAATGGCCTTGAGCGCTTCAAACATGTAA
Protein sequence (LotjaGi2g1v0381700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAADEDICMSDLKSQLSQLHDTWKQEIERSQSQMDLLQAKLMEVKDCIQGSDGDAKKELEVLLRRVNTSATLLTYLKSKA RLMAVPHLAHTSCGIKPLEGVGFVDKNGTPLSGWSSDVELSSFNDADEESWIGISRQHGFLDEQDAAYIGDVLKSVNMVG DVMEVLVKRVLLAESETAVEKEKASLCQEEIKRKSARLENMSMKLEEMQHFVLSTNSIINEMQQRVEDLVEETTRQSQRA AENEEELSRVKQEFESLKSYVSGLITVRETLLSSEKQFQTIEKLFEKLVAKTTQLEGEKMQKEAEVQKLMEENVKLNAQL DKKEAQLLALNEQCKVMALSASNM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 7 | 344 | 338 | 1.0E-157 | – | |
| PANTHER | 7 | 344 | 338 | 1.0E-157 | ||
| Coils | 20 | 40 | 21 | - | – | |
| Coils | 188 | 208 | 21 | - | – | |
| Coils | 219 | 260 | 42 | - | – | |
| Coils | 292 | 333 | 42 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Response to red or far red light | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a red or far red light stimulus. Red light is electromagnetic radiation of wavelength of 580-700nm. Far red light is electromagnetic radiation of wavelength 700-800nm. An example of this response is seen at the beginning of many plant species developmental stages. These include germination, and the point when cotyledon expansion is triggered. In certain species these processes take place in response to absorption of red light by the pigment molecule phytochrome, but the signal can be reversed by exposure to far red light. During the initial phase the phytochrome molecule is only present in the red light absorbing form, but on absorption of red light it changes to a far red light absorbing form, triggering progress through development. An immediate short period of exposure to far red light entirely returns the pigment to its initial state and prevents triggering of the developmental process. A thirty minute break between red and subsequent far red light exposure renders the red light effect irreversible, and development then occurs regardless of whether far red light exposure subsequently occurs. | ||
| Biological process | Negative gravitropism | The orientation of plant parts away from gravity. |
Expression pattern of LotjaGi2g1v0381700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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