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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0020909 |
| Transcript ID | Lj0g3v0020909.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At3g29230-like [Glycine max] gi|356523586|ref|XP_003530418.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 32 | 558 | 527 | 2.10E-298 | – | |
| PANTHER | 32 | 558 | 527 | 2.10E-298 | – | |
| Pfam | 80 | 128 | 49 | 7.10E-08 | ||
| ProSiteProfiles | 81 | 116 | 36 | 9.087 | ||
| ProSiteProfiles | 152 | 184 | 33 | 7.794 | ||
| ProSiteProfiles | 185 | 215 | 31 | 11.696 | ||
| Pfam | 187 | 216 | 30 | 4.80E-09 | ||
| TIGRFAM | 187 | 218 | 32 | 1.40E-08 | ||
| ProSiteProfiles | 216 | 250 | 35 | 12.627 | ||
| Gene3D | 217 | 233 | 17 | 2.20E-05 | ||
| Pfam | 218 | 247 | 30 | 8.00E-10 | ||
| TIGRFAM | 218 | 248 | 31 | 3.70E-09 | ||
| Gene3D | 234 | 277 | 44 | 1.70E-04 | ||
| TIGRFAM | 249 | 273 | 25 | 1.10E-04 | ||
| ProSiteProfiles | 251 | 277 | 27 | 5.963 | ||
| Pfam | 277 | 314 | 38 | 2.30E-08 | ||
| ProSiteProfiles | 278 | 312 | 35 | 12.057 | ||
| TIGRFAM | 280 | 313 | 34 | 2.70E-07 | ||
| ProSiteProfiles | 313 | 347 | 35 | 5.327 | ||
| ProSiteProfiles | 348 | 378 | 31 | 7.772 | ||
| Pfam | 353 | 377 | 25 | 0.0012 | ||
| Pfam | 379 | 426 | 48 | 5.10E-12 | ||
| ProSiteProfiles | 380 | 414 | 35 | 12.858 | ||
| TIGRFAM | 382 | 415 | 34 | 1.80E-09 | ||
| ProSiteProfiles | 415 | 450 | 36 | 7.103 | ||
| TIGRFAM | 417 | 450 | 34 | 0.0015 | ||
| ProSiteProfiles | 451 | 481 | 31 | 7.87 | ||
| Pfam | 454 | 479 | 26 | 5.60E-04 | ||
| TIGRFAM | 455 | 478 | 24 | 9.50E-04 | ||
| Gene3D | 481 | 534 | 54 | 2.20E-05 | ||
| ProSiteProfiles | 517 | 551 | 35 | 6.489 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj0g3v0020909.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0020909.1, powered by CORGI.
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